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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.15774s0333.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 175aa MW: 19973.1 Da PI: 9.9047 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.8 | 1.3e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien + rqvtfskRr g+lKKA+ELSvLCda+va +ifs++g+lye++s Bostr.15774s0333.1.p 9 KKIENVTSRQVTFSKRRSGLLKKAHELSVLCDAQVAAMIFSQKGRLYEFAS 59 68***********************************************86 PP | |||||||
2 | K-box | 38.1 | 6.4e-14 | 74 | 143 | 14 | 83 |
K-box 14 aeslqqelakLkk..eienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 e+ e+ +++ +ie L+ +R+l+G++L +s keLq++ +q+eksl +Rs+K l+ +++++l+ k Bostr.15774s0333.1.p 74 REYFGAESHSIEQyvQIEVLEVHNRKLMGQSLAYCSAKELQEIATQIEKSLHIVRSTK--LYEDELKKLKAK 143 555556666665544899***999*******************************987..778888888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.9E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.371 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.31E-30 | 3 | 83 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.75E-39 | 3 | 73 | No hit | No description |
PRINTS | PR00404 | 1.4E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.1E-11 | 75 | 144 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MVRGKIEIKK IENVTSRQVT FSKRRSGLLK KAHELSVLCD AQVAAMIFSQ KGRLYEFASS 60 DIQKTIKRYA EYKREYFGAE SHSIEQYVQI EVLEVHNRKL MGQSLAYCSA KELQEIATQI 120 EKSLHIVRST KLYEDELKKL KAKVGERPMG MSSGNKEKED VETDLFIGLP KSRP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n6j_A | 6e-21 | 3 | 102 | 2 | 93 | Myocyte-specific enhancer factor 2B |
1n6j_B | 6e-21 | 3 | 102 | 2 | 93 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.15774s0333.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY141221 | 3e-97 | AY141221.1 Arabidopsis thaliana MADS-box protein AGL72 mRNA, complete cds. | |||
GenBank | DQ447061 | 3e-97 | DQ447061.1 Arabidopsis thaliana clone pENTR221-At5g51860 MADS-box protein (At5g51860) mRNA, complete cds. | |||
GenBank | DQ653360 | 3e-97 | DQ653360.1 Arabidopsis thaliana clone 0000017130_0000012002 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010443997.1 | 1e-107 | PREDICTED: MADS-box protein AGL72 | ||||
Refseq | XP_019087581.1 | 1e-107 | PREDICTED: MADS-box protein AGL72 | ||||
Swissprot | Q9FLH5 | 5e-99 | AGL72_ARATH; MADS-box protein AGL72 | ||||
TrEMBL | D7MRJ7 | 1e-99 | D7MRJ7_ARALL; MADS-box protein | ||||
STRING | Bostr.15774s0333.1.p | 1e-124 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51860.2 | 1e-103 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.15774s0333.1.p |
Publications ? help Back to Top | |||
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