PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.15774s0324.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 197aa    MW: 22895.5 Da    PI: 8.8792
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.15774s0324.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.91e-142677255
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                          +++h e Er+RR+++ + ++ Lr+llP  +   ++K s ++ + +Av+YIk+Lq
  Bostr.15774s0324.1.p 26 KMMHRETERQRRQEMATLYASLRSLLPLHF--IKGKRSTSDQVNEAVNYIKYLQ 77
                          789*************************65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.2972476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.29E-92681No hitNo description
Gene3DG3DSA:4.10.280.101.0E-102690IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-112677IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.26E-142692IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-73082IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MDDCREKRRR RCTKLTCSTD NNDMEKMMHR ETERQRRQEM ATLYASLRSL LPLHFIKGKR  60
STSDQVNEAV NYIKYLQRKI KELSLRRDEL LLLSRGSFLG YSNDDFKEEM EMMSRKNHVV  120
VRQCLVGVEI VFSSRCCSGQ PRFSSVLQVL SENGLCLLNS ISSIVDDRMI YTIQAEVNDM  180
ALIDLAALEN RLVRMK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.15774s0324.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3174300.0AK317430.1 Arabidopsis thaliana AT5G51780 mRNA, complete cds, clone: RAFL24-28-D24.
GenBankBT0109520.0BT010952.1 Arabidopsis thaliana At5g51780 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281135.11e-125transcription factor bHLH36
SwissprotQ9FLI11e-107BH036_ARATH; Transcription factor bHLH36
TrEMBLR0GSA51e-123R0GSA5_9BRAS; Uncharacterized protein
STRINGBostr.15774s0324.1.p1e-141(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.11e-100bHLH family protein