PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.15774s0314.3.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ARF
Protein Properties Length: 463aa    MW: 52509.6 Da    PI: 8.7244
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.15774s0314.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.13.8e-1915773599
                          EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                    B3 35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                          +   +d++g++W +k+++r+k++r++lt+GW+ Fv a++L +gD++vF   + +++el+v+++r+
  Bostr.15774s0314.3.p 15 EFLTKDLHGKEWGFKHSFRGKPRRHLLTTGWSAFVTAKRLVAGDVFVFL--RGETGELRVGIRRA 77
                          566799*******************************************..449999*****996 PP
2Auxin_resp103.42.7e-34102181183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                           a+ha++++++F+vvY+Pr+  s+Fvv+++k+++a+++k+ vG+Rf m+fe+ed+serr+sGt++gv+++++ +W++S+WrsL+
  Bostr.15774s0314.3.p 102 AMHAFDNQCMFTVVYKPRT--SQFVVSYDKFLDAMNNKFNVGSRFTMRFEGEDFSERRYSGTIIGVNNFSS-HWKDSEWRSLQ 181
                           789***************6..9**********************************************888.*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.661178IPR003340B3 DNA binding domain
SMARTSM010194.1E-5278IPR003340B3 DNA binding domain
SuperFamilySSF1019366.67E-19583IPR015300DNA-binding pseudobarrel domain
CDDcd100173.11E-15976No hitNo description
Gene3DG3DSA:2.40.330.101.2E-231289IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-161477IPR003340B3 DNA binding domain
PfamPF065074.8E-31102181IPR010525Auxin response factor
PfamPF023094.3E-7356403IPR033389AUX/IAA domain
SuperFamilySSF542772.35E-12363443No hitNo description
PROSITE profilePS5174524.619367448IPR000270PB1 domain
PfamPF023091.7E-6406451IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MPDTTDMSIP IPTQEFLTKD LHGKEWGFKH SFRGKPRRHL LTTGWSAFVT AKRLVAGDVF  60
VFLRGETGEL RVGIRRAGHQ EGNISSSLVS MESMRHGVIA SAMHAFDNQC MFTVVYKPRT  120
SQFVVSYDKF LDAMNNKFNV GSRFTMRFEG EDFSERRYSG TIIGVNNFSS HWKDSEWRSL  180
QVQWDELASF PRRDKVSPWE IEHLTPSSNV LQSSLLKNKR SRHVNEIGST SSHLLPPILT  240
QGQEIGQPSM TSPMSIPQLN YRDEIEDAKT PSSLLMSYSV PTMPKSNYNN DQMVTPIKEN  300
ITTVAGASCR LFGVSLATPS YIKDPMEPND SNQISEFSKI SQEKKFDLTQ TLTSPKEIQS  360
KQFSSTRSYT KVQMQGVTIG RALDLSVLNG YDQLIRELEK LFDLKGLLRT RNQWEIVFTD  420
NEGDMMLVGD DPWPEFRNMV KKIIICSKEE VKNLKSGNNL SN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-766204154355Auxin response factor 1
4ldw_A1e-766204154355Auxin response factor 1
4ldw_B1e-766204154355Auxin response factor 1
4ldx_A1e-766204154355Auxin response factor 1
4ldx_B1e-766204154355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.15774s0314.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010478873.10.0PREDICTED: putative auxin response factor 14 isoform X1
SwissprotQ9LQE80.0ARFN_ARATH; Putative auxin response factor 14
TrEMBLD7KK630.0D7KK63_ARALL; Auxin response factor
STRINGBostr.15774s0314.1.p0.0(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35540.10.0auxin response factor 14