PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.15774s0231.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

bHLH

Protein Properties

Length: 303aa MW: 33733.8 Da PI: 7.6315

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.15774s0231.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.2	7e-09	160	207	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++ Lq Bostr.15774s0231.1.p 160 SHSLAERVRREKISERMRILQKLVPGC----DKVTGKALMLDEIINYVQTLQ 207 8***********************9....555**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.77E-10	154	211	No hit	No description
SuperFamily	SSF47459	1.15E-16	154	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.32	156	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.1E-16	156	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.8E-6	160	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-9	162	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009739	Biological Process	response to gibberellin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MATFSYFQNY PHSLLDPILF PTPNSSINLT GFIDQNPLHS LPNISTIEDT SLNPFLDEYN 60 VDKNESSGFK KQTNTTKTAT TGSSSCDQLS HGPSTTAKNG KIRRWKIKNV SNSKEGVEGR 120 KSKKQRKDTP SNVKEKRGSK EEPPKDYIHV RARRGQATDS HSLAERVRRE KISERMRILQ 180 KLVPGCDKVT GKALMLDEII NYVQTLQNQV EFLSMKLASI SPVVYDFGSD LDGLIHRSEM 240 GSPEVGTSFT NIMPTTTPIF PSLLDNSIVP THAQLQEEGE EGEEGEKFVD RSGFNNSFCS 300 FP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.15774s0231.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF428350	0.0	AF428350.1 Arabidopsis thaliana unknown protein mRNA, complete cds.
GenBank	AY057549	0.0	AY057549.1 Arabidopsis thaliana probable DNA-binding protein mRNA, complete cds.
GenBank	AY087602	0.0	AY087602.1 Arabidopsis thaliana clone 36971 mRNA, complete sequence.
GenBank	AY113059	0.0	AY113059.1 Arabidopsis thaliana At5g50917/At5g50917 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006280862.1	0.0	transcription factor bHLH137
Swissprot	Q93W88	1e-172	BH137_ARATH; Transcription factor bHLH137
TrEMBL	R0GN38	0.0	R0GN38_9BRAS; Uncharacterized protein
STRING	Bostr.15774s0231.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8796	24	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	1e-161	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bostr.15774s0231.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]