PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.15697s0367.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 265aa    MW: 30586.8 Da    PI: 7.1288
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.15697s0367.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.32.4e-07139183655
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +++ r+RR+ri ++ +eL +l+P +     +K + ae+   A +Y+k Lq
  Bostr.15697s0367.1.p 139 SIAARNRRRRITEKSQELGKLIPGS-----QKHNTAEMFHAAAKYVKFLQ 183
                           6788*******************98.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-10131196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-10132198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.239133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-7139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-5139183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MIMPETDTFF FQAQPQHQPL HHDEALSPSL FGFDHFDHFE SFLPTQEIFL PSHKTEVFNE  60
SRDLDSFFPT PKHKKIINSS FHFNIHDPFP PSPNSILMDS YITEASNISE FRVPDFSATF  120
KVGWAEQGDT KKRELSAQSI AARNRRRRIT EKSQELGKLI PGSQKHNTAE MFHAAAKYVK  180
FLQAQIEILQ LKQTKMQTRD SSKVGREMQF LLTSQEIQEK LSTEEVCVVP REMVQVLKAE  240
ECILRNPKIS RDLNKLLSTN LMNY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130147KKRELSAQSIAARNRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.15697s0367.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885870.0AF488587.1 Arabidopsis thaliana clone bHLH052 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002893639.21e-163transcription factor bHLH52
SwissprotQ9SA821e-160BH052_ARATH; Transcription factor bHLH52
TrEMBLD7KFM81e-162D7KFM8_ARALL; Basic helix-loop-helix family protein
STRINGBostr.15697s0367.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.11e-163bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]