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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Bostr.15697s0063.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family |
SBP |
Protein Properties |
Length: 397aa MW: 44408.5 Da PI: 8.3778 |
Description |
SBP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Bostr.15697s0063.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SBP | 128.4 | 2.8e-40 | 175 | 251 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77
+Cq++gC+ dls+ak+yhr+h+vCe+hsk+p+v+vsgle+rfCqqCsrfh++sefDe+krsCr+rL++hn+rrrk+q
Bostr.15697s0063.1.p 175 RCQIDGCDLDLSSAKDYHRKHRVCEKHSKCPKVTVSGLERRFCQQCSRFHAISEFDEKKRSCRKRLSHHNARRRKPQ 251
6**************************************************************************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010358 | Biological Process | leaf shaping |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 397 aa
Download sequence Send
to blast |
MDCNMVSSFQ WDWENLIMSN PSKTENENKQ QSAEWEFEKG EGIESIIPDF LGFERVSSGS 60 ATSFWHTAVS KSSQSTSINS SSHEAKQCKL ASQSSPGDSC SNIDFVQVKA STALEVSVAS 120 TESDLCLKLG KRTYSEEFLG RNNNDISAVS MKLLTPSVVA RKKSKSCDQR MQVPRCQIDG 180 CDLDLSSAKD YHRKHRVCEK HSKCPKVTVS GLERRFCQQC SRFHAISEFD EKKRSCRKRL 240 SHHNARRRKP QGVFPLNPER VYDRRQHTSM LWNGLSLNTR SEETNAWGTT YETKPTQMES 300 GFTLSFQRGN GSEEQLFASN SRSFSVFQTS GRFSAGKSNI QLPDKGLGEC SGGLHESQDF 360 YSALSLLSTS SDPRGTKHNP VVEPQPIFGT FPTHFI*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 231 | 248 | KKRSCRKRLSHHNARRRK |
Functional Description ? help
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Source |
Description |
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AJ011637 | 0.0 | AJ011637.1 Arabidopsis thaliana (ecotype Columbia) mRNA for squamosa promoter binding protein-like 10. |
GenBank | AY142028 | 0.0 | AY142028.1 Arabidopsis thaliana At1g27370/F17L21_16 mRNA, complete cds. |
Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Yu N,Niu QW,Ng KH,Chua NH
The role of miR156/SPLs modules in Arabidopsis lateral root development. Plant J., 2015. 83(4): p. 673-85 [PMID:26096676] - Xu M, et al.
Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana. PLoS Genet., 2016. 12(8): p. e1006263 [PMID:27541584] - Gao R,Wang Y,Gruber MY,Hannoufa A
miR156/SPL10 Modulates Lateral Root Development, Branching and Leaf Morphology in Arabidopsis by Silencing AGAMOUS-LIKE 79. Front Plant Sci, 2017. 8: p. 2226 [PMID:29354153] - Dotto M,Gómez MS,Soto MS,Casati P
UV-B radiation delays flowering time through changes in the PRC2 complex activity and miR156 levels in Arabidopsis thaliana. Plant Cell Environ., 2018. 41(6): p. 1394-1406 [PMID:29447428]
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