 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Bostr.15654s0049.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
| Family |
C2H2 |
| Protein Properties |
Length: 421aa MW: 46426.7 Da PI: 9.8049 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bostr.15654s0049.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 16.4 | 2.6e-05 | 180 | 202 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23
Cp Cg++F+ ++L+ H+ + H
Bostr.15654s0049.1.p 180 ACPQCGEVFPKLETLELHQAVrH 202
6******************9888 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 421 aa
Download sequence Send
to blast |
MAPLPFIPEQ THSQTRLSSD AKKKNRKKKT SQPPPQTQTQ KLKQKTVPST SSSSSSWNHI 60
KNLLSCKQIE GPRVHEPSKI TSSSCGSSLC KFSDVIYGNA RVIHRSDHSP ESSNLGQDAR 120
LLTRKPVNRE SSSSVRSNGC GAYTSYSSSK AMHFRKFSGC YECHMIVDPS RYPIAPRVCA 180
CPQCGEVFPK LETLELHQAV RHAVSELGPE DSGRNIVDII FKSSWLRKDS PIYKIERILK 240
VHNTQRTIQR FEDCRDVVKS HAHASTRKEP RSAADGNELL RFYCTTVSCS LGSRGSTSLC 300
SAIPGCRVCT IIRHGFHAKT VRVGNGEGKE EIKGVRTTAS SGRAHDALRC FDQRRAMLVC 360
RVIAGRVRRV QSDVPEDESS GSYDSVAGAA GVYTSLDDLV VFNPRAILPC FVVIYKVSEP 420
*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK228879 | 0.0 | AK228879.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-20-B08. |
