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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Bostr.15654s0036.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
| Family |
MYB |
| Protein Properties |
Length: 242aa MW: 28206.7 Da PI: 8.7908 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bostr.15654s0036.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 57.4 | 3.4e-18 | 33 | 80 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT eEd +l+ ++ ++G g+W++ +r g++Rt+k+c++rw++yl
Bostr.15654s0036.1.p 33 RGPWTVEEDMKLISYISLHGEGRWNSLSRSAGLNRTGKSCRLRWLNYL 80
89********************************************97 PP
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| 2 | Myb_DNA-binding | 45.6 | 1.6e-14 | 86 | 129 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg + +E+ ++++++ ++G++ W++Ia++++ gRt++++k++w++
Bostr.15654s0036.1.p 86 RGDISLQEQFIILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 129
5666889***************.*********.***********96 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 242 aa
Download sequence Send
to blast |
MNTSRTEFAN CKTIKQKEEV EEVEKKMEKE IRRGPWTVEE DMKLISYISL HGEGRWNSLS 60
RSAGLNRTGK SCRLRWLNYL HPDIRRGDIS LQEQFIILEL HSRWGNRWSK IAQHLPGRTD 120
NEIKNYWRTR VQKHAKLLKC DVNSKQFKDT IKHLWMPRLV ERIASTQNFE STPKHYSPEN 180
SSVATATSST SSSESVRSSF YGDQVEYGTL DHMTNGGDWF NGGDAFETLW SFDELNMWLL 240
Q*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK229083 | 0.0 | AK229083.1 Arabidopsis thaliana mRNA for putative transcription factor MYB112, complete cds, clone: RAFL16-36-L19. |
| GenBank | AY519562 | 0.0 | AY519562.1 Arabidopsis thaliana MYB transcription factor (At1g48000) mRNA, complete cds. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Yang A,Dai X,Zhang WH
A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
J. Exp. Bot., 2012. 63(7): p. 2541-56
[PMID:22301384] - Chen X, et al.
The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
Plant Cell Physiol., 2014. 55(3): p. 604-19
[PMID:24399239] - Lv Y, et al.
New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
Plant Cell Environ., 2016. 39(3): p. 556-70
[PMID:26381647] - Hong Y,Zhang H,Huang L,Li D,Song F
Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
Front Plant Sci, 2016. 7: p. 4
[PMID:26834774]
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