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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Bostr.14547s0014.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
| Family |
bHLH |
| Protein Properties |
Length: 406aa MW: 43685.5 Da PI: 7.8643 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bostr.14547s0014.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 49.1 | 1e-15 | 219 | 264 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq
Bostr.14547s0014.1.p 219 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 264
9************************8.....7******************9 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm |
| GO:0009506 | Cellular Component | plasmodesma |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 406 aa
Download sequence Send
to blast |
MSQCVPNCHI DDTPAAAAAT TTVRSTTAAD IPMLDYEVAE LTWENGQLGM HGLGPPKVTA 60
SSTKYSTGAG GTLESIVDQA TRLPNTKPTD ELVPWFHHRS SRAAMAMDAL VPCSNLREQQ 120
SKPGGVGSTR VGSCSDGRTM AGGKRARVAP EWSGSGSQRL TMDTYDVGFT STSMGSPDNT 180
IDDHDSVCHS RPQMEDEEEK RAGGKSSVST KRSRAAAIHN QSERKRRDKI NQRMKTLQKL 240
VPNSSKTDKA SMLDEVIEYL KQLQAQVSMM SRMNMPSMML PMALQQQQQL QMPLMSNPMG 300
LGIGMGMPGL GVLDLNSMNR AAAAAAAAAT APNIHANMMP NPFVPMTSPS WDASSNDARF 360
QSPLIPDPMA TFLACSSQPT TMEAYSRMAA LYQQMQQQLP PSNPK*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 222 | 227 | ERKRRD |
| 2 | 223 | 228 | RKRRDK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Required during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF488561 | 0.0 | AF488561.1 Arabidopsis thaliana clone bHLH016 putative bHLH transcription factor mRNA, complete cds. |
| GenBank | AK117229 | 0.0 | AK117229.1 Arabidopsis thaliana At4g00050 mRNA for putative bHLH transcription factor (bHLH016), complete cds, clone: RAFL16-78-C08. |
| GenBank | BT025971 | 0.0 | BT025971.1 Arabidopsis thaliana At4g00050 mRNA, complete cds. |
