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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.14547s0014.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | bHLH | ||||||||
Protein Properties | Length: 406aa MW: 43685.5 Da PI: 7.8643 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.1 | 1e-15 | 219 | 264 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq Bostr.14547s0014.1.p 219 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 264 9************************8.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.01E-18 | 212 | 276 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.815 | 214 | 263 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.04E-17 | 219 | 268 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.4E-18 | 219 | 273 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-13 | 219 | 264 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.4E-18 | 220 | 269 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MSQCVPNCHI DDTPAAAAAT TTVRSTTAAD IPMLDYEVAE LTWENGQLGM HGLGPPKVTA 60 SSTKYSTGAG GTLESIVDQA TRLPNTKPTD ELVPWFHHRS SRAAMAMDAL VPCSNLREQQ 120 SKPGGVGSTR VGSCSDGRTM AGGKRARVAP EWSGSGSQRL TMDTYDVGFT STSMGSPDNT 180 IDDHDSVCHS RPQMEDEEEK RAGGKSSVST KRSRAAAIHN QSERKRRDKI NQRMKTLQKL 240 VPNSSKTDKA SMLDEVIEYL KQLQAQVSMM SRMNMPSMML PMALQQQQQL QMPLMSNPMG 300 LGIGMGMPGL GVLDLNSMNR AAAAAAAAAT APNIHANMMP NPFVPMTSPS WDASSNDARF 360 QSPLIPDPMA TFLACSSQPT TMEAYSRMAA LYQQMQQQLP PSNPK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 222 | 227 | ERKRRD |
2 | 223 | 228 | RKRRDK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00034 | PBM | Transfer from AT4G00050 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.14547s0014.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF488561 | 0.0 | AF488561.1 Arabidopsis thaliana clone bHLH016 putative bHLH transcription factor mRNA, complete cds. | |||
GenBank | AK117229 | 0.0 | AK117229.1 Arabidopsis thaliana At4g00050 mRNA for putative bHLH transcription factor (bHLH016), complete cds, clone: RAFL16-78-C08. | |||
GenBank | BT025971 | 0.0 | BT025971.1 Arabidopsis thaliana At4g00050 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010426522.1 | 0.0 | PREDICTED: transcription factor UNE10-like | ||||
Swissprot | Q8GZ38 | 0.0 | UNE10_ARATH; Transcription factor UNE10 | ||||
TrEMBL | D7M5T4 | 0.0 | D7M5T4_ARALL; Uncharacterized protein | ||||
STRING | Bostr.14547s0014.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3919 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 0.0 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.14547s0014.1.p |
Publications ? help Back to Top | |||
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