PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13671s0419.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 445aa    MW: 50364.1 Da    PI: 7.6201
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13671s0419.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.3e-13265306854
                           HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            Er+RRdriN+++  Lr ++Pk      +K++K+ iL  Av+YI++L
  Bostr.13671s0419.1.p 265 SERKRRDRINQGMYALRAVVPKI-----TKMNKIGILSDAVDYINEL 306
                           6*********************7.....7***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.2E-1510157IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000832.48E-12255311No hitNo description
SuperFamilySSF474597.85E-16256318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.345257306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-15260321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-14263312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10264306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MMRGGERVKE FLRPFVDSKT WDLCVIWKLG DDPSRFIEWV GCCCSGSYVD ENIKLENAEE  60
GTERKKKGSF CRDEHNKHHI RTLACEALSH FPLFMPLYPG IHGEVVMSKS PKWFVNSGPG  120
SKKDMFNTRV LVPVSDGLVE LFSFKMKPFD ETMVAMIISC CKAFFEPFPA QRLQFRIIPR  180
AEESMSSGVN LSFEGGGSSS VSTHSSETQN LFGNHPNARC GEIFREEQAP CLVMNKEDPV  240
VQDATDCKAK KKLPKENFKS KNLLSERKRR DRINQGMYAL RAVVPKITKM NKIGILSDAV  300
DYINELLVEK QKLEDELKGI NEMECKEIAA EEESAIADPE AEKLSSKLNK KMKKNEVNLE  360
VHEIGERDFL IRVAQEHKRD GFKRLLEAVD SCGLEIIDVN FTRLDLTVMT VLNVKANKDG  420
IASGNLRDSL LKMMINQKID RKSP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249269KKKLPKENFKSKNLLSERKRR
2265270ERKRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13671s0419.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2293750.0AK229375.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor bHLH090, complete cds, clone: RAFL16-62-E05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306313.10.0transcription factor bHLH90
RefseqXP_010491516.10.0PREDICTED: transcription factor bHLH90-like
RefseqXP_010491531.10.0PREDICTED: transcription factor bHLH90-like
RefseqXP_010491539.10.0PREDICTED: transcription factor bHLH90-like
SwissprotQ0WNR20.0BH090_ARATH; Transcription factor bHLH90
TrEMBLR0GTT20.0R0GTT2_9BRAS; Uncharacterized protein
STRINGBostr.13671s0419.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69852742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.10.0bHLH family protein