PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13671s0117.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 302aa    MW: 34274.8 Da    PI: 6.737
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13671s0117.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-05100119120
                           EEETTTTEEESSHHHHHHHH CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                           ++C+ C+k+F+r  n++ H+
  Bostr.13671s0117.1.p 100 FSCSVCNKTFNRFNNMQMHM 119
                           89*****************9 PP
2zf-C2H2110.0014185208123
                           EEET.TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCp.dCgksFsrksnLkrHirtH 23 
                           ++C  +C k+F  + + ++H +++
  Bostr.13671s0117.1.p 185 FRCRkKCEKTFAVRGDWRTHEKNC 208
                           89******************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.57E-596121No hitNo description
PROSITE profilePS5015710.263100127IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.6E-6100119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-4171206IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MYDNNQYCIS GDEDSVVLSL GPPGQSYTSH NKPTTKPSSN NEFNLPSTNP NGVTVALHIG  60
PPNSDKETLT GGNNQEGLMA RQGQYWIPSL SQILVGPTQF SCSVCNKTFN RFNNMQMHMW  120
GHGSQYRKGP ESLRGTKSSS SILRLPCYCC AEGCKNNIDH PRSKPLKDFR TLQTHYKRKH  180
GAKPFRCRKK CEKTFAVRGD WRTHEKNCGK LWFCVCGSDF KHKRSLKDHV RAFGDGHAAH  240
TLGDRVVSIG DAEEDDEEEE EEEEDDEEEE DAHEENVRGE KNYGIRYEHF RRYGQISDDN  300
Y*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13671s0117.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118090.0AJ311809.1 Arabidopsis thaliana mRNA for WIP6 protein (At1g13290 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010495185.10.0PREDICTED: zinc finger protein WIP6
SwissprotQ9FX680.0ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A178WLC90.0A0A178WLC9_ARATH; WIP6
TrEMBLR0GPB20.0R0GPB2_9BRAS; Uncharacterized protein
STRINGBostr.13671s0117.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.10.0C2H2-like zinc finger protein