PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13158s0200.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 360aa    MW: 41106.5 Da    PI: 7.3282
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13158s0200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.6e-14179229154
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           +r +h ++Er+RR+++N+ ++ Lr llP++   + ++ + a+i+  A++Y+k L
  Bostr.13158s0200.1.p 179 QRINHIAVERNRRRQMNEHINSLRALLPPS---YIQRGDQASIVGGAINYVKVL 229
                           699***************************...9*****************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-16177244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.72E-11177234No hitNo description
PROSITE profilePS5088815.51178229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-11179229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-13180242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-10184235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MERFQGHINP CFLDRKADVK SLEVQGFAEA QSFAIKEEEE SLQDTVPFLQ MLQSEDPSSF  60
FTIKEPNFLT LLSIQSFKEP WELGSFPEFH SPRQSETNSF YQKPISASSM ERTNQAWSSQ  120
ELPFRQENMT LPSSTSSPVT TNSRRKRKIN HLLAPEMIRE KRKRRKTKPS KNIEEIENQR  180
INHIAVERNR RRQMNEHINS LRALLPPSYI QRGDQASIVG GAINYVKVLE QIIQSLESQK  240
RTQQSSEVVG NANNHLSGIS SNELWTTRED QTCIPKIEAT VIQNHVSLKV QCLKKQEQLL  300
KGIISLEKLR LTVLHLNIAS SSHSSVSYSF NLKMEDDCDL ESADEITAAV HQIFDIPTI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145165KRKINHLLAPEMIREKRKRRK
2160165KRKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13158s0200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304810.0AJ630481.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At3g61950.
GenBankAK1185270.0AK118527.1 Arabidopsis thaliana At3g61950 mRNA for putative bHLH transcription factor (bHLH067), complete cds, clone: RAFL19-75-M14.
GenBankBT0052980.0BT005298.1 Arabidopsis thaliana At3g61950 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006292401.10.0transcription factor bHLH67 isoform X2
SwissprotQ700E40.0BH067_ARATH; Transcription factor bHLH67
TrEMBLR0H7K90.0R0H7K9_9BRAS; Uncharacterized protein
STRINGBostr.13158s0200.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61950.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yu H,Murchie EH,González-Carranza ZH,Pyke KA,Roberts JA
    Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development.
    J. Exp. Bot., 2015. 66(5): p. 1543-52
    [PMID:25582452]