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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.13158s0102.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 173aa MW: 19600.2 Da PI: 9.8376 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.8 | 4.3e-21 | 9 | 56 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien + rqv fskR+ g+lKKA+ vLCdae+a+iifs++gklye+s+ Bostr.13158s0102.1.p 9 KKIENMTSRQVIFSKRKGGLLKKAY---VLCDAEIALIIFSNSGKLYEFSN 56 68**********************9...*********************95 PP | |||||||
2 | K-box | 15.2 | 9.2e-07 | 77 | 105 | 8 | 36 |
K-box 8 sleeakaeslqqelakLkkeienLqreqR 36 ++ e+ ++s++qe++kLk+++e+L r++R Bostr.13158s0102.1.p 77 DKLEESTQSWRQEMTKLKSKYESLLRTHR 105 4556779*******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.497 | 1 | 58 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.7E-29 | 1 | 57 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.86E-33 | 2 | 72 | No hit | No description |
SuperFamily | SSF55455 | 1.83E-24 | 2 | 86 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-11 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.6E-18 | 10 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-11 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MGRGRVEVKK IENMTSRQVI FSKRKGGLLK KAYVLCDAEI ALIIFSNSGK LYEFSNVGIG 60 RTIERYYRCK NNFLDNDKLE ESTQSWRQEM TKLKSKYESL LRTHRLSRPI VKLGGHAGST 120 DFSLQSSHPN YLSDCDVGYF LQIGVQQHYE QGGGSSVSKS NARRDCETNF VQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-15 | 1 | 66 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 1e-15 | 1 | 66 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 1e-15 | 1 | 66 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 1e-15 | 1 | 66 | 1 | 69 | MEF2 CHIMERA |
6bz1_A | 2e-15 | 1 | 66 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 2e-15 | 1 | 66 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 2e-15 | 1 | 66 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 2e-15 | 1 | 66 | 1 | 69 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.13158s0102.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATU20183 | 2e-89 | U20183.1 Arabidopsis thaliana MADS-box protein AGL13 (AGL13) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006402519.1 | 2e-64 | agamous-like MADS-box protein AGL13 | ||||
Swissprot | Q38837 | 6e-52 | AGL13_ARATH; Agamous-like MADS-box protein AGL13 | ||||
TrEMBL | M4DD86 | 5e-64 | M4DD86_BRARP; Uncharacterized protein | ||||
STRING | Bostr.13158s0102.1.p | 1e-125 | (Boechera stricta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61120.1 | 2e-54 | AGAMOUS-like 13 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.13158s0102.1.p |
Publications ? help Back to Top | |||
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