 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Bostr.13158s0054.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
| Family |
GATA |
| Protein Properties |
Length: 252aa MW: 27386.5 Da PI: 7.4351 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bostr.13158s0054.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 56.2 | 4.5e-18 | 171 | 205 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C++C + kTp+WR gp g+ktLCnaCG++y++ +l
Bostr.13158s0054.1.p 171 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 205
*******************************9885 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009416 | Biological Process | response to light stimulus |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 252 aa
Download sequence Send
to blast |
MDVYGMSSPD LLRIDDLLDF SNDEIFSSSS STVTSSAASS AASSSFPSEN TFKFPSSVYT 60
SPPLLTDFTH DLCVPSDDAA HLEWLSRFVD DSFSDFPTNS LTMTVRPEIS FTGKPRSRRS 120
RASAPPSVAG TWAPMPESEL CHSVAKPNPK KEYGAESVTA DGGGGGGARR CTHCASEKTP 180
QWRTGPLGPK TLCNACGVRY KSGRLVPEYR PASSPTFVLT QHSNSHRKVM ELRRQKEQQE 240
SCLQIPPFQP R*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF378881 | 0.0 | AF378881.1 Arabidopsis thaliana AT3g60530/T8B10_190 mRNA, complete cds. |
| GenBank | AY039532 | 0.0 | AY039532.1 Arabidopsis thaliana AT3g60530/T8B10_190 mRNA, complete cds. |
| GenBank | AY050476 | 0.0 | AY050476.1 Arabidopsis thaliana AT3g60530/T8B10_190 mRNA, complete cds. |
| GenBank | Y13651 | 0.0 | Y13651.1 Arabidopsis thaliana mRNA for GATA transcription factor 4. |
