PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Bostr.13129s0453.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

C2H2

Protein Properties

Length: 204aa MW: 22248.7 Da PI: 6.346

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.13129s0453.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.4e-05	27	49	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC++C+k+F L H++ H Bostr.13129s0453.1.p 27 YKCKYCPKRFDKTQALGGHQNAH 49 9****************999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.42E-6	24	55	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.8E-4	26	53	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	8.0E-6	27	52	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.988	27	54	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	29	49	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MLSSDSNYAS DISDDDSATG SIENPKYKCK YCPKRFDKTQ ALGGHQNAHR KEREVTKKQK 60 QAFLAHLNQP APDLYSYSHP HLFPNQYALP PGFEQPRYKV DRSDNLTMMY NQYAGSSSAG 120 FAGLRSDPSQ GMGRGWIFTG IPFQTQPQPQ PLLSASSPVC LDLCLGVGSS QTQPQPEEPN 180 DAADEMGVGK ENDGSSLSLS LKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.13129s0453.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002871138.2	1e-110	zinc finger protein 5
TrEMBL	D7LYA9	1e-109	D7LYA9_ARALL; Zinc finger family protein
STRING	Bostr.13129s0453.1.p	1e-150	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15741	13	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05120.1	1e-105	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Bostr.13129s0453.1.p