PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.13129s0406.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 205aa MW: 23117.3 Da PI: 7.4363 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40 | 4.9e-13 | 13 | 50 | 5 | 42 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 ++ r+ ++ kR+ng++KK +ELS+LCd+++ +i f Bostr.13129s0406.1.p 13 DQKSRKASLKKRLNGLIKKKNELSILCDVQAFLIFFDR 50 567899****************************9964 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.3E-12 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 15.572 | 1 | 48 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.32E-20 | 2 | 85 | No hit | No description |
PRINTS | PR00404 | 9.1E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.66E-19 | 3 | 94 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-12 | 13 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.1E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.1E-7 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MARRKLQLAW TGDQKSRKAS LKKRLNGLIK KKNELSILCD VQAFLIFFDR EEDQLVVWPS 60 PEAAKSLIDN FYSLTDHERN KKAVDHESFI QTIIQKIEKK LADSRKVDKL ISYSGKKMMC 120 LSKEMGPTEQ LDTTVDEGSL GDETLRASNV PSTGWGGNGF NVMETGSIYY IDKWVFVDPE 180 VQNPCDEAHS PTTVNVLRPN YGTI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.13129s0406.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010423334.1 | 2e-89 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A178ULF5 | 8e-78 | A0A178ULF5_ARATH; AGL96 | ||||
STRING | Bostr.13129s0406.1.p | 1e-152 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8774 | 13 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06500.1 | 8e-82 | AGAMOUS-like 96 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.13129s0406.1.p |