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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.13129s0308.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | C2H2 | ||||||||
Protein Properties | Length: 187aa MW: 21634.1 Da PI: 9.7734 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.9 | 8.6e-06 | 52 | 74 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C +sF+++ L H++ H Bostr.13129s0308.1.p 52 FKCHYCFRSFPTSQALGGHQNAH 74 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.03E-7 | 48 | 79 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.8E-4 | 48 | 78 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 3.3E-6 | 51 | 76 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.261 | 52 | 79 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 54 | 74 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MKTHDFMNVN SSSLKERPIR LFGFEFGASQ EESESKDNYN ESINDNNKEK RFKCHYCFRS 60 FPTSQALGGH QNAHKKERQQ TKRFNLHSNA AALFHRHQDH VAACRLFEDR FIVEAAQIND 120 ARLGLLRRYN SSARFNRDGP SYNKYMPLFI GDNQTRPTYV GGSSRHGLFY ESKTNIPDHV 180 SLDLRL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin and cytokinin. Is not involved in the regulation of trichome branching. Is functionally equivalent to ZFP8. {ECO:0000269|PubMed:17507408}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.13129s0308.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cytokinin and gibberellin. {ECO:0000269|PubMed:17507408}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP002543 | 0.0 | AP002543.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F15M7. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010423315.1 | 1e-111 | PREDICTED: zinc finger protein GIS2-like | ||||
Swissprot | Q9FG05 | 1e-109 | GIS2_ARATH; Zinc finger protein GIS2 | ||||
TrEMBL | A0A178UCF6 | 1e-108 | A0A178UCF6_ARATH; GIS2 | ||||
STRING | Bostr.13129s0308.1.p | 1e-137 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14659 | 12 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06650.1 | 1e-112 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.13129s0308.1.p |
Publications ? help Back to Top | |||
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