PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13129s0247.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ARR-B
Protein Properties Length: 625aa    MW: 70468.8 Da    PI: 6.5829
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13129s0247.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like70.23.3e-22230283155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           k+++ Wt  LH+ F++a++++ G +kA+Pk+il +m+v+ Lt+e+v+SHLQkYR+
  Bostr.13129s0247.1.p 230 KTKITWTDYLHDLFLQAIRHI-GLDKAVPKKILAFMNVPYLTRENVASHLQKYRI 283
                           6799*****************.********************************6 PP
2Response_reg78.42.4e-26181341110
                           EEEESSSHHHHHHHHHHHHHTTC.....EEEE..EESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEEST CS
          Response_reg   1 vlivdDeplvrellrqalekegy.....eeva..eaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtah 80 
                           v++vdD+p+++++l ++lek++y     +e++  +a+d++eal +l  +++++Dli++D  mpgm+Gl+l ++i++e  +lp+iv+++ 
  Bostr.13129s0247.1.p  18 VMVVDDDPVFLNILSRMLEKSKYrdplvMEITviAAKDPTEALSTLkiQRNNIDLIITDYYMPGMNGLQLKRQITQEFGNLPVIVMSSD 106
                           89*****************9999666663444359**********9445555************************99*********77 PP

                           TTHHHHHHHHHTTESEEEESS--HHHHHHH CS
          Response_reg  81 geeedalealkaGakdflsKpfdpeelvka 110
                            +    +e l  Ga++f+ Kp++p +l+k 
  Bostr.13129s0247.1.p 107 TN--KEQESLTCGAMGFIPKPIKPIDLTKI 134
                           66..7799******************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.4E-1271624IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.4E-2915143No hitNo description
SuperFamilySSF521722.56E-2716146IPR011006CheY-like superfamily
SMARTSM004484.1E-2616135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011036.50517139IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.4E-2318135IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.63E-2719139No hitNo description
Gene3DG3DSA:1.10.10.609.6E-23228287IPR009057Homeodomain-like
SuperFamilySSF466893.05E-17228287IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-24230283IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MAFPQSFYNQ SSVLRINVMV VDDDPVFLNI LSRMLEKSKY RDPLVMEITV IAAKDPTEAL  60
STLKIQRNNI DLIITDYYMP GMNGLQLKRQ ITQEFGNLPV IVMSSDTNKE QESLTCGAMG  120
FIPKPIKPID LTKIYQFALT YKRNGKSILS TEHNHEDTDV SVPQQIKLLP EQANAVKTTK  180
KKCSSKPDSR SVNSTNGSCV STDGSRKNRK RKPNGGPSDD GESLSQPSKK TKITWTDYLH  240
DLFLQAIRHI GLDKAVPKKI LAFMNVPYLT RENVASHLQK YRIFLRKVAE QGLMSILSGR  300
GIDSMFRYTH IKEPYFNHYT PSTSWYDTSL NNRSFYSKPG HGLGQSRLLS NTREPVRFNQ  360
RPYNYMNRSS TYELHRIGSG SNLTLPIQSN ISLPNQPSQN EERRSFFETP VMATKIGQTS  420
QVLGFGQLGP SAISGTNFNN NIMSSYGSFT PNQPGPSHFS YGMQSFLNNE NTAYNPQPHA  480
NATTQPNLEP PQLENLNLYS DLGKTSELPY NISNFQFDHN KQQQGEEAST KFELPANFST  540
ELNQILSLED DGDWTFVNIN QGHSNGETSN AFGAPETNPP IFDMNPNQNQ EQDVNPDFSD  600
WSFLDPQELV DDDFMNSLFN NDMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-19229289464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13129s0247.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1636520.0AL163652.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T28J14 (ESSA project).
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002871257.10.0putative two-component response regulator ARR21 isoform X1
SwissprotQ9LYP50.0ARR21_ARATH; Putative two-component response regulator ARR21
TrEMBLD7M0G70.0D7M0G7_ARALL; Two-component response regulator
STRINGBostr.13129s0247.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61131737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.10.0response regulator 21