PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.12659s0370.2.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

bHLH

Protein Properties

Length: 413aa MW: 45557.9 Da PI: 6.7531

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.12659s0370.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.6	5.2e-09	258	306	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Bostr.12659s0370.2.p 258 NSHSLAERVRREKISERMKFLQDLVPGC----DKVTGKAVMLDEIINYVQSLQ 306 58***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.4E-16	253	323	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.224	255	305	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.6E-6	258	306	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-15	258	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.03E-11	259	310	No hit	No description
SMART	SM00353	9.8E-9	261	311	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009637	Biological Process	response to blue light
GO:0009911	Biological Process	positive regulation of flower development
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MDMSDKDEFA AKKRDLVNTP VDWRISVFNP TLLYTPENPM SAPSQMMDSF RQNLWHDGGG 60 FNVHTDAGTS FRGNIDRPLE MGWNMAQFPA DSGFIERAAK FSFFGCGSFG EMMMNQQSLG 120 VPESTGLFLQ DTHIGIGSKL GNGPINKDAS KVVKDRPNGS SNISEDSQSS GGNGHDAKCM 180 EISSKGFNTK KRKRTGKESE PDQSHRGQQS GEEQEDKKQK DEQTPNSNAN KTNSGKQASD 240 PLKDGYIHMR ARRGHATNSH SLAERVRREK ISERMKFLQD LVPGCDKVTG KAVMLDEIIN 300 YVQSLQCQIE FLSMKLSAVN PVLDFNLESL LAKDALQVFA PTCPQNMSML YPPLSYLSQT 360 GFMQPNLSSM SLLNGGLKRQ ETHGYGSDHH NVVHMNHETG TAPDHEDTTG GK*

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MDMSDKDEFA AKKRDLVNTP VDWRISVFNP TLLYTPENPM SAPSQMMDSF RQNLWHDGGG  60
FNVHTDAGTS FRGNIDRPLE MGWNMAQFPA DSGFIERAAK FSFFGCGSFG EMMMNQQSLG  120
VPESTGLFLQ DTHIGIGSKL GNGPINKDAS KVVKDRPNGS SNISEDSQSS GGNGHDAKCM  180
EISSKGFNTK KRKRTGKESE PDQSHRGQQS GEEQEDKKQK DEQTPNSNAN KTNSGKQASD  240
PLKDGYIHMR ARRGHATNSH SLAERVRREK ISERMKFLQD LVPGCDKVTG KAVMLDEIIN  300
YVQSLQCQIE FLSMKLSAVN PVLDFNLESL LAKDALQVFA PTCPQNMSML YPPLSYLSQT  360
GFMQPNLSSM SLLNGGLKRQ ETHGYGSDHH NVVHMNHETG TAPDHEDTTG GK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	189	194	KKRKRT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269\|PubMed:23161888, ECO:0000269\|PubMed:24130508}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.12659s0370.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ630483	0.0	AJ630483.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g26260.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006307586.2	0.0	transcription factor bHLH76
Swissprot	Q9C670	0.0	BH076_ARATH; Transcription factor bHLH76
TrEMBL	R0IP79	0.0	R0IP79_9BRAS; Uncharacterized protein (Fragment)
STRING	Bostr.12659s0370.1.p	0.0	(Boechera stricta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26260.2	0.0	cryptochrome-interacting basic-helix-loop-helix 5

Link Out ? help Back to Top
Phytozome	Bostr.12659s0370.2.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]