PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.12659s0337.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | C2H2 | ||||||||
Protein Properties | Length: 463aa MW: 51811 Da PI: 9.6196 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.8 | 0.00076 | 406 | 428 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++F++ L H r+H Bostr.12659s0337.1.p 406 HECPICFRVFKSGQALGGHKRSH 428 79******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 4.4E-5 | 5 | 32 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.01E-5 | 5 | 34 | No hit | No description |
SMART | SM00355 | 0.72 | 9 | 31 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 0.0042 | 9 | 32 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.076 | 9 | 36 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 11 | 31 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.076 | 90 | 118 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.4 | 91 | 113 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.3E-4 | 91 | 115 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.66E-6 | 92 | 113 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 92 | 113 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.66E-6 | 401 | 428 | No hit | No description |
PROSITE profile | PS50157 | 8.974 | 406 | 428 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.14 | 406 | 428 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.0E-10 | 406 | 428 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 408 | 428 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MEEFKERKFV CRFCSKRFAC GKSLGGHVRT HMMNENSLDS DEDESNKLKM IDENGGQSSY 60 GLRENPKKNK RFVDHRQMMA LKQQQQHQQL RCCRECGKGF VSSKALCGHM ACHSEREKIV 120 MDSQSDTEAS SSPIRRRSKR VVVKHRHKAA FVVGGNGIMN QSNSASSDAS EIEPEQEEIA 180 LSLMMLSRDS SFKKGHNLMV NSLAESSDNN SVILETKSSS GEQLKMFNVK NVEDFSKNNK 240 LGVDNQVRSG EDNGDILYDS DNSDSGYFRN GPKKLDSDVS VDGFLRNTGF DNKAVMVSRS 300 GFNSSATKQD KNLNRFRKEW YKEGGSGSGS GSGRSSTKYD LRKSKRGFPS YGRKKIKYEF 360 NESVYDSGEH SLETDSCADT NRTIKIHSKS PMVKKASGAK KKSKGHECPI CFRVFKSGQA 420 LGGHKRSHFI GNQEHRTLVI QHQVAHEMHT LIDLNLPAPI DE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.12659s0337.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | T1K7 | 0.0 | AC013427.3 Sequence of BAC T1K7 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006306284.1 | 0.0 | uncharacterized protein LOC17900354 | ||||
TrEMBL | R0GTA2 | 0.0 | R0GTA2_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.12659s0337.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1900 | 21 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26610.1 | 0.0 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.12659s0337.1.p |