PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.12659s0199.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family TALE
Protein Properties Length: 328aa    MW: 36886.4 Da    PI: 4.7794
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.12659s0199.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.79.6e-092703042155
                           HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
              Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                           k +yp++ ++  LA+ +gL+++q+ +WF N+R ++
  Bostr.12659s0199.1.p 270 KWPYPTEGDKIALADATGLDQKQINNWFINQRKRH 304
                           669*****************************885 PP
2ELK30.11.1e-10224245122
                   ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                           +LK++LlrK++++++sLk EFs
  Bostr.12659s0199.1.p 224 DLKDRLLRKFGSRISSLKLEFS 245
                           69*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.1E-2383127IPR005540KNOX1
PfamPF037902.4E-2185126IPR005540KNOX1
SMARTSM012563.3E-26134185IPR005541KNOX2
PfamPF037911.8E-24138184IPR005541KNOX2
SMARTSM011886.3E-5224245IPR005539ELK domain
PROSITE profilePS512139.83224244IPR005539ELK domain
PfamPF037892.6E-7224245IPR005539ELK domain
PROSITE profilePS5007112.341244307IPR001356Homeobox domain
SuperFamilySSF466892.4E-19245320IPR009057Homeodomain-like
SMARTSM003891.9E-12246311IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.8E-27249308IPR009057Homeodomain-like
CDDcd000861.06E-11253308No hitNo description
PfamPF059204.8E-17264303IPR008422Homeobox KN domain
PROSITE patternPS000270282305IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDGMYNFHSA GDYSDKAVRM MSPESLMFHS DYQALLCSSA GENRVSDVFG SDELLSAAAS  60
ALSSEAASIA PEIRRNDENV SLSVIKAKIA CHPSYPRLVQ AYIDCQKVGA PPEIACLLEE  120
IQRESDVYKR DVVPLSCYGA DPELDEFMET YCDILVKYKS DLARPFDEAT SFLNKIEMQL  180
RNLCTGVDSA RGVSEDGAIS SDEELSGGDH EVAEDGKQRC EDRDLKDRLL RKFGSRISSL  240
KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ  300
RKRHWKPSEN MPFAMMDDSS GSFFTEE*
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.12659s0199.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0029300.0BT002930.1 Arabidopsis thaliana clone RAFL14-89-I21 (R20256) putative homeodomain transcription factor KNAT6 (At1g23380) mRNA, complete cds.
GenBankBT0043700.0BT004370.1 Arabidopsis thaliana clone U20256 putative homeodomain transcription factor KNAT6 (At1g23380) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_850951.20.0homeobox protein knotted-1-like 6
SwissprotQ84JS60.0KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLD7KNF20.0D7KNF2_ARALL; Uncharacterized protein
STRINGBostr.12659s0199.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8352785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.10.0KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]