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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.10273s0407.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | G2-like | ||||||||
Protein Properties | Length: 340aa MW: 38294.3 Da PI: 6.5198 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.3 | 3e-32 | 33 | 87 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt++LH+rF+eav+qLGG++kAtPk ++++m+++gLtl+h+kSHLQkYRl Bostr.10273s0407.2.p 33 KPRLKWTCDLHHRFIEAVNQLGGPNKATPKGLMKVMEIPGLTLYHLKSHLQKYRL 87 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-28 | 31 | 88 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.66E-15 | 32 | 87 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.8E-22 | 33 | 88 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.9E-6 | 35 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.5E-23 | 136 | 182 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MCLLMEINNN ANNNNNNNNL KAKVSLVLST DAKPRLKWTC DLHHRFIEAV NQLGGPNKAT 60 PKGLMKVMEI PGLTLYHLKS HLQKYRLGKS MKFDDNKLEV SSASENQEAE SNNDSRDLRG 120 CSVTEENSNP SKEGLQITEA LQMQMEVQKK LHEQIEVQRH LQVKIEAQGK YLQSVLMKAQ 180 QTLAGYTSST LGMEFARTEL SRLASMVNRG YPSSSFSELT QAEEEEEAEE GFLWCKKPEN 240 RGISQLRCSV ESSLTSSESS ETKLDDNNNI NRSIELPLME IKSEVIKGKK RSLNDVVRVE 300 HQPLMKRAFG VDDDEHLKLS LNSYKKDMET CPNIGLGFN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-19 | 32 | 89 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-19 | 32 | 89 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-19 | 32 | 89 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-19 | 32 | 89 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-19 | 32 | 89 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-19 | 32 | 89 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-19 | 32 | 89 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-19 | 32 | 89 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.10273s0407.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT029516 | 0.0 | BT029516.1 Arabidopsis thaliana At1g69580 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010470954.1 | 0.0 | PREDICTED: myb family transcription factor PHL8 isoform X4 | ||||
Swissprot | F4I274 | 0.0 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
TrEMBL | R0IB87 | 0.0 | R0IB87_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.10273s0407.1.p | 0.0 | (Boechera stricta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69580.1 | 0.0 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.10273s0407.2.p |
Publications ? help Back to Top | |||
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