PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10273s0381.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family WRKY
Protein Properties Length: 384aa    MW: 42679.4 Da    PI: 7.249
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10273s0381.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.41.1e-26200259259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-.SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkvers.aedpkvveitYegeHnhe 59 
                           +Dg++WrKYGqK+ k ++ pr+YYrC+++ +Cpv+k+v+r+ +ed+++  +tYeg+H+h+
  Bostr.10273s0381.1.p 200 NDGCQWRKYGQKTAKTNPLPRAYYRCSMStNCPVRKQVQRCgEEDTSAYMTTYEGNHDHP 259
                           8***************************99**********8457999************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.0E-28184261IPR003657WRKY domain
PROSITE profilePS5081124.409194261IPR003657WRKY domain
SuperFamilySSF1182904.18E-24195261IPR003657WRKY domain
SMARTSM007744.8E-33199260IPR003657WRKY domain
PfamPF031067.7E-25200259IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MIKEETISCF QPFDVVMGES DKEEELDATK AKVEKVREEN EKLKLLLSTI LNNYNSLQMH  60
VSNVLRQQQG ASMELNVDRQ EKNNDVGVDV SLRLGRTEQT ISTKEEKADK ASDENEEGSK  120
KKRSALGLGF QIQNREVSRL DDLCRNVKNV NAENKCVSSR KDVKTARNES HQDVLKEHEQ  180
ASLKKTRVCV KAACEDPSIN DGCQWRKYGQ KTAKTNPLPR AYYRCSMSTN CPVRKQVQRC  240
GEEDTSAYMT TYEGNHDHPL PMEATHMAAG TSAAASLLQS GSISSSSSTS ASLSEFFPFH  300
HFSISTTNSH PTVSLDLIRP NYTNQSPNYP LSSSSFGLSF SSSDPPPPSS YDHTLNFSGL  360
RTQAPLSTDS LMARYRTRLS GQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-181992611474WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10273s0381.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935300.0AB493530.1 Arabidopsis thaliana At1g69810 mRNA for hypothetical protein, partial cds, clone: RAAt1g69810.
GenBankBT0292340.0BT029234.1 Arabidopsis thaliana At1g69810 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002888739.10.0probable WRKY transcription factor 36
SwissprotQ9CAR40.0WRK36_ARATH; Probable WRKY transcription factor 36
TrEMBLD7KXJ90.0D7KXJ9_ARALL; WRKY DNA-binding protein 36
STRINGBostr.10273s0381.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139131825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69810.10.0WRKY DNA-binding protein 36
Publications ? help Back to Top
  1. Yang Y, et al.
    UVR8 interacts with WRKY36 to regulate HY5 transcription and hypocotyl elongation in Arabidopsis.
    Nat Plants, 2018. 4(2): p. 98-107
    [PMID:29379156]