PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10273s0131.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 321aa    MW: 35809.8 Da    PI: 5.1447
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10273s0131.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.92.3e-15122173155
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+k+L+
  Bostr.10273s0131.1.p 122 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINYLKELE 173
                           79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.43E-14120177No hitNo description
SuperFamilySSF474593.66E-17120188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-14121177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.418121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-12122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-11127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.589244320IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MALEAVVYPQ DPFSYISCKD FPFHDLYFQE EEDGDQQDTK NNIKIGQGQE HGFASNNYNG  60
KSGDNSDDYN YNEEDLHWPR DLPYGSAVDT KNQPPPSDVA AGGRRKRRRT RSSKNKEEIE  120
NQRMTHIAVE RNRRKQMNEY LAVLRSLMPP SYAQRGDQAS IVGGAINYLK ELEHHLQSME  180
PPVKTAAEDT EAGRDQTNTI AASSAGPFSD FFAFPQYSSQ PPLAAAAAEG MAEIEVTMVE  240
SHASLKILAK KRPRQLLKLV ASIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE  300
DIAAAVNQIL KRIEEESSFS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104108RKRRR
2104109RKRRRT
3122133RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10273s0131.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4597710.0AJ459771.1 Arabidopsis thaliana mRNA for basic-helix-loop-helix transcription factor (bHLH096 gene).
GenBankBT0038710.0BT003871.1 Arabidopsis thaliana clone RAFL15-42-L08 (R20946) putative bHLH protein (At1g72210) mRNA, complete cds.
GenBankBT0060860.0BT006086.1 Arabidopsis thaliana clone U20946 putative bHLH protein (At1g72210) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302555.10.0transcription factor bHLH96
SwissprotQ9C7T40.0BH096_ARATH; Transcription factor bHLH96
TrEMBLR0IFC40.0R0IFC4_9BRAS; Uncharacterized protein
STRINGBostr.10273s0131.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]