PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10199s0147.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 331aa    MW: 38269.4 Da    PI: 7.7607
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10199s0147.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.4e-06233256123
                           EEETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                           y+Cp+C+ +F+++  +  Hi++ H
  Bostr.10199s0147.1.p 233 YTCPKCNSVFNTSQKFAAHISSiH 256
                           9*******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0063233256IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.536233261IPR007087Zinc finger, C2H2
PROSITE patternPS000280235256IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MTSIPNGLSS YGDDTMNIRS FTPIEKSSNF RNYESKMVES VFITSDHTNH HGLFSSSHIS  60
SSSFGFNNSY VAYQIRENMV STFGMPCTTQ VSDNPHLSQI SVTQTIINRY SAIIPTNHLI  120
TSQNEYHRSM NPNIFNSSFY PPNSVEKRCE ILNPTPLNTV FPHQSSVYPR HLDMFSFSSK  180
HHHDQHVPHH QPVKKRCRPT RYFEENFEVS NSEENGEYDG RTHSLPYKKY GPYTCPKCNS  240
VFNTSQKFAA HISSIHYKNE TINERFKRYN ARNKKKLCKT NQMIHEESHK IQPEERVVDE  300
SGGNNNIPSD PEAYQHHINV KEEPIYDLFY *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00523DAPTransfer from AT5G22990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10199s0147.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289316.11e-178uncharacterized protein LOC17881949
TrEMBLR0GZ561e-176R0GZ56_9BRAS; Uncharacterized protein
STRINGBostr.10199s0147.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22990.11e-131C2H2-like zinc finger protein