![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bostr.10040s0018.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 394aa MW: 42983.1 Da PI: 6.3999 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.2 | 1.1e-06 | 280 | 318 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++++ + L++l+ + +K + a++L++A+eYIk L Bostr.10040s0018.1.p 280 VRKENLRDQITSLQQLVSPF-----GKTDTASVLQEAIEYIKFL 318 5778999**********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.935 | 269 | 318 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-11 | 279 | 333 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.46E-6 | 279 | 322 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.2E-9 | 279 | 329 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0071 | 279 | 324 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0042631 | Biological Process | cellular response to water deprivation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071215 | Biological Process | cellular response to abscisic acid stimulus | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:2000214 | Biological Process | regulation of proline metabolic process | ||||
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 394 aa Download sequence Send to blast |
MAEEFQATAA ICGGGGGAWW NSPRSVMSPS DHFLSPFFGA AITSNDFGSQ ENNIKSRMSC 60 MDNNIVFGQR EADSDSGGST VTIDSTLQMM GLGFSSNAST DWNQTILQED LNSNFIRSSQ 120 DQDHGQGFLS TTTSPYILNP ACSSSPSTSS SSSLLRTFYE PEPSPYNFIS TTSGSINDPQ 180 LSWANKTNPH HQTAYGLINN FSNNANSRPF WSSSSTTNLN NTTPNNFVTT PQISSTRLED 240 KTKNLKTRAQ SESLKRAKDN ESAAKKPRVT TPSPLPTFKV RKENLRDQIT SLQQLVSPFG 300 KTDTASVLQE AIEYIKFLHD QVTVLSTPYM KQGASSQQQQ QQISGKSKSQ DGNENHELRA 360 HGLCLVPISS TFPVANETTA DFWTPTFGGN NFR* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bostr.10040s0018.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF380649 | 0.0 | AF380649.1 Arabidopsis thaliana At1g61660/T13M11_21 mRNA, complete cds. | |||
GenBank | AY113072 | 0.0 | AY113072.1 Arabidopsis thaliana At1g61660/T13M11_21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001322872.1 | 0.0 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Refseq | NP_564782.1 | 0.0 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Swissprot | Q94JL3 | 0.0 | BH112_ARATH; Transcription factor bHLH112 | ||||
TrEMBL | A0A178WKI7 | 0.0 | A0A178WKI7_ARATH; Uncharacterized protein | ||||
STRING | Bostr.10040s0018.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8062 | 26 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G61660.1 | 0.0 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bostr.10040s0018.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|