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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.0697s0054.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | SRS | ||||||||
Protein Properties | Length: 181aa MW: 20051 Da PI: 10.3785 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 155.1 | 4.8e-48 | 34 | 170 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93 +++ C+dCGn+akk+C +eRCRtCCksrg++CathvkstWvp++ +r+ +++ s+rk++lk++kqs+++ + l+ Bostr.0697s0054.1.p 34 TEKVCRDCGNRAKKECLFERCRTCCKSRGYNCATHVKSTWVPSSATRS----------------SSSPSERKKKLKIDKQSSANVSILPI 107 6789****************************************9998................35667788888899999999999999 PP DUF702 94 aeskkeletss.lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 ++s++e ++++ lP +++++avfr++rv+++++ +++e++Yq++v+i+GhvfkG+L+++G+++ Bostr.0697s0054.1.p 108 TTSRQERSFKEgLPGKIEAPAVFRRTRVTAISNnEQAEIGYQATVTISGHVFKGFLHYYGVDH 170 999999998877*******************9868899***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 2.6E-42 | 36 | 169 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 5.2E-27 | 37 | 78 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 5.8E-29 | 120 | 168 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MLGLRNIFLL SPPPQITRPS PSPVNFAAVE DNKTEKVCRD CGNRAKKECL FERCRTCCKS 60 RGYNCATHVK STWVPSSATR SSSSPSERKK KLKIDKQSSA NVSILPITTS RQERSFKEGL 120 PGKIEAPAVF RRTRVTAISN NEQAEIGYQA TVTISGHVFK GFLHYYGVDH NKAFPCLSQK 180 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM) (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.0697s0054.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF446889 | 0.0 | AF446889.1 Arabidopsis thaliana AT3g54430/T12E18_120 mRNA, complete cds. | |||
GenBank | AY052675 | 0.0 | AY052675.1 Arabidopsis thaliana AT3g54430/T12E18_120 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006291913.1 | 1e-115 | protein SHI RELATED SEQUENCE 6 | ||||
Swissprot | Q9M2U4 | 1e-112 | SRS6_ARATH; Protein SHI RELATED SEQUENCE 6 | ||||
TrEMBL | R0FRH6 | 1e-114 | R0FRH6_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.0697s0054.1.p | 1e-131 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11959 | 23 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54430.1 | 7e-99 | SHI-related sequence 6 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.0697s0054.1.p |
Publications ? help Back to Top | |||
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