PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.0597s0159.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | CO-like | ||||||||
Protein Properties | Length: 333aa MW: 37176.9 Da PI: 5.4469 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.9 | 4.3e-08 | 2 | 45 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 e+ C+ + +++ ++C++++ lC +C ++ H+ Ht++ Bostr.0597s0159.1.p 2 EPQCDYCATEKALIYCKSDSAKLCLNCDVNVHSAnplsqrHTRS 45 689******99*********************667888888875 PP | |||||||
2 | CCT | 60.1 | 7.6e-21 | 278 | 320 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R++a++RYk+K+++R F K+irY+sRKa+A++R+RvKGrFvk Bostr.0597s0159.1.p 278 RDEAKKRYKQKKSKRMFGKQIRYASRKARADTRKRVKGRFVKT 320 99***************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 3.1E-11 | 1 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.2E-6 | 2 | 45 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.96E-6 | 3 | 47 | No hit | No description |
PROSITE profile | PS50119 | 9.442 | 5 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 3.7E-16 | 278 | 320 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 14.396 | 278 | 320 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MEPQCDYCAT EKALIYCKSD SAKLCLNCDV NVHSANPLSQ RHTRSLLCEK CFLQPTVIHC 60 LNEKVSLCQG CHWTASNCTG LGHRLQYLNP YSGCPSPSDF TKIWSSNLEA SVSNWVSPFD 120 DCTKINELVD WDGLSTPMVT QTQNLKDQSS IFFMESNLPN VIEEECFGLD LCEGINLDDA 180 PLSFNASNDI IGCSSLDQTK CYLYEDSYKE DNNVGLSSLL LPALSRGNVV PSMSLSMSNI 240 TGESSATDYQ DCGISPGFLI GDSPWDSNVE FSYNPKSRDE AKKRYKQKKS KRMFGKQIRY 300 ASRKARADTR KRVKGRFVKT GETFEYDPSP MM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.0597s0159.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010449953.1 | 0.0 | PREDICTED: putative zinc finger protein CONSTANS-LIKE 11 | ||||
Swissprot | O23379 | 0.0 | COL11_ARATH; Putative zinc finger protein CONSTANS-LIKE 11 | ||||
TrEMBL | D7MAK3 | 0.0 | D7MAK3_ARALL; Zinc finger (B-box type) family protein | ||||
TrEMBL | R0GLP7 | 0.0 | R0GLP7_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.0597s0159.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5319 | 22 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15250.1 | 0.0 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Bostr.0597s0159.1.p |