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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.0568s0247.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | ZF-HD | ||||||||
Protein Properties | Length: 278aa MW: 30895.3 Da PI: 6.2278 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.2 | 7.3e-32 | 69 | 122 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 ++r++eClkN+A+++GghavDGCgEfmp+ g egt++alkCaACgCHRnFHR+e Bostr.0568s0247.1.p 69 RFRFRECLKNQAVNIGGHAVDGCGEFMPA-GIEGTIDALKCAACGCHRNFHRKEL 122 789*************************9.999********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.3E-28 | 70 | 121 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-24 | 71 | 122 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 6.0E-29 | 71 | 121 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.415 | 72 | 121 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE pattern | PS00028 | 0 | 108 | 132 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:1.10.10.60 | 1.3E-30 | 180 | 250 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.52E-18 | 183 | 250 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 6.6E-26 | 189 | 245 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010371 | Biological Process | regulation of gibberellin biosynthetic process | ||||
GO:0010431 | Biological Process | seed maturation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MEFEDNNNDE EQEEDMNLHE EEEEEDAVYD SPPLSRGVVK ASTESHETTG TTSTGGGGFM 60 VVHGGGGSRF RFRECLKNQA VNIGGHAVDG CGEFMPAGIE GTIDALKCAA CGCHRNFHRK 120 ELPYFHNAPP QHQPPPPPSG FYRLPAPVSY LPPPSQAPPL QLALPPPQRE RSEDPMETSS 180 AEAGRGGIRK RFRTKFTAEQ KERMLALAER IGWRIQRQDD EVIQRFCQET GVPRQVLKVW 240 LHNNKHTLGK SPPPLHHHQP PPTTAPQSSF HHEQDQP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 2e-35 | 188 | 247 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00588 | DAP | Transfer from AT5G65410 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.0568s0247.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB011479 | 0.0 | AB011479.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNA5. | |||
GenBank | BT002385 | 0.0 | BT002385.1 Arabidopsis thaliana putative protein (At5g65410) mRNA, complete cds. | |||
GenBank | BT006304 | 0.0 | BT006304.1 Arabidopsis thaliana At5g65410 mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002864955.1 | 1e-148 | zinc-finger homeodomain protein 1 | ||||
Swissprot | Q9FKP8 | 1e-144 | ZHD1_ARATH; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | D7MTX9 | 1e-147 | D7MTX9_ARALL; Uncharacterized protein | ||||
STRING | Bostr.0568s0247.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13237 | 17 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65410.1 | 1e-115 | homeobox protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.0568s0247.1.p |
Publications ? help Back to Top | |||
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