 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Bostr.0568s0128.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
| Family |
bHLH |
| Protein Properties |
Length: 246aa MW: 26683.4 Da PI: 9.9842 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bostr.0568s0128.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 26.2 | 1.4e-08 | 143 | 183 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
r RR+ri +++ L++l+P +K++ a++L +A++Y+k L
Bostr.0568s0128.1.p 143 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 183
699*****************87.....8****************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010500 | Biological Process | transmitting tissue development |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0048462 | Biological Process | carpel formation |
| GO:2000012 | Biological Process | regulation of auxin polar transport |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 246 aa
Download sequence Send
to blast |
MDSDIMNMMM LQMEKLPEFC NPNSSFFSPD HNNSNHNHNT YPFLFNSSHN HSDHSMTNEP 60
GFRYGSAGLL TNPSSLSPNT AYSSVLLDKR NNSNINNSTN MAAMREMIFR IAVMQPIHID 120
PEAVKPPKRR NVRISKDPQS VAARHRRERI SERIRILQRL VPGGTKMDTA SMLDEAIHYV 180
KFLKKQVQSL EEQAVVNGGG GGGMVLIGGG GMAAASGGGG SGGVVMKGCG AMGTHQMVGN 240
AQILR*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Required for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB020742 | 0.0 | AB020742.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21H1. |
| GenBank | AF488618 | 0.0 | AF488618.1 Arabidopsis thaliana clone bHLH088 putative bHLH transcription factor mRNA, complete cds. |
| GenBank | AK228927 | 0.0 | AK228927.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL16-24-D23. |
| GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Vercruyssen L, et al.
ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
Plant Cell, 2014. 26(1): p. 210-29
[PMID:24443518] - Sparks EE,Benfey PN
HEC of a job regulating stem cells.
Dev. Cell, 2014. 28(4): p. 349-50
[PMID:24576420] - Zhu L, et al.
A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
Plant Cell, 2016. 28(4): p. 855-74
[PMID:27073231] - Lozano-Sotomayor P, et al.
Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
Plant J., 2016. 88(3): p. 437-451
[PMID:27402171] - Boex-Fontvieille E, et al.
An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
Front Plant Sci, 2016. 7: p. 1246
[PMID:27625656] - Gaillochet C, et al.
Control of plant cell fate transitions by transcriptional and hormonal signals.
Elife, 2018.
[PMID:29058667]
|
