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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Bostr.0556s0764.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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| Family |
C2H2 |
| Protein Properties |
Length: 285aa MW: 30879.8 Da PI: 4.5974 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bostr.0556s0764.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13.2 | 0.00026 | 258 | 280 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23
+C+ C+k+F++ L++H + H
Bostr.0556s0764.1.p 258 SCTSCKKTFNSGNALESHNKAkH 280
6*****************88766 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 285 aa
Download sequence Send
to blast |
MEFWGIEVKP GKPVKVTPEE DTLLHVSQAS LGECKNKKGE FVPLHVKVGD QKFVLGTLST 60
ENIPQLFCDL VFDREFELSH NWGKGSVYFV GYKSPNIEDN EEGEYFSDSE EEEEEVEEVP 120
ATITANGNVA KAVAKPKAKP AEVKKNAKPE SADDDEEDDS DSEEGMDDDE DGSDDDEEDS 180
EEEEETPTPK KPESSKKRAN EAAPKTPVSA KKAKVAVTPQ KTEEKKKGGH TATPHPAKKG 240
GKTPTTATQS PKSASQVSCT SCKKTFNSGN ALESHNKAKH SAAK*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probably mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Required for histone H3 'Lys-9' deacetylation. Involved in rRNA gene silencing in nucleolar dominance. Seems to be implicated in the regulation of genes involved in seeds development. {ECO:0000269|PubMed:10792817, ECO:0000269|PubMed:12694598, ECO:0000269|PubMed:14992728, ECO:0000269|PubMed:15144374}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF195545 | 1e-119 | AF195545.1 Arabidopsis thaliana putative histone deacetylase (HD2A) mRNA, complete cds. |
| GenBank | AY065396 | 1e-119 | AY065396.1 Arabidopsis thaliana putative histone deacetylase (At3g44750) mRNA, complete cds. |
| GenBank | AY096729 | 1e-119 | AY096729.1 Arabidopsis thaliana putative histone deacetylase (At3g44750) mRNA, complete cds. |
| Publications
? help Back to Top |
- Song Y,Wu K,Dhaubhadel S,An L,Tian L
Arabidopsis DNA methyltransferase AtDNMT2 associates with histone deacetylase AtHD2s activity.
Biochem. Biophys. Res. Commun., 2010. 396(2): p. 187-92
[PMID:20331964] - Lee K,Park OS,Jung SJ,Seo PJ
Histone deacetylation-mediated cellular dedifferentiation in Arabidopsis.
J. Plant Physiol., 2016. 191: p. 95-100
[PMID:26724747] - Han Z, et al.
AtHD2D Gene Plays a Role in Plant Growth, Development, and Response to Abiotic Stresses in Arabidopsis thaliana.
Front Plant Sci, 2016. 7: p. 310
[PMID:27066015] - Li H, et al.
Plant-Specific Histone Deacetylases HDT1/2 Regulate GIBBERELLIN 2-OXIDASE2 Expression to Control Arabidopsis Root Meristem Cell Number.
Plant Cell, 2017. 29(9): p. 2183-2196
[PMID:28855334]
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