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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Bostr.0556s0620.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family |
MIKC_MADS |
Protein Properties |
Length: 246aa MW: 27925.3 Da PI: 10.4158 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Bostr.0556s0620.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 90.9 | 6.3e-29 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
rienk++rqvtfskRr+g+ KKA+E+SvLCda+va+i+fs++gkl+eys
Bostr.0556s0620.1.p 10 RIENKIRRQVTFSKRRTGLVKKAQEISVLCDADVALIVFSPKGKLFEYS 58
8***********************************************8 PP
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2 | K-box | 84.9 | 1.7e-28 | 88 | 171 | 14 | 97 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97
++++++e +kL + i+ +qr++Rhl+Ge+++ Ls++eLq Le qL+++lkk Rs+Kn+l++e+i +lqkkekel+e +k+L+kk
Bostr.0556s0620.1.p 88 QAECSTECSKLLRMIDVMQRSIRHLKGEEVDALSIRELQGLEMQLDTALKKTRSRKNQLMVESITQLQKKEKELKELKKQLTKK 171
567999***************************************************************************998 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 5.3E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.6 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.94E-31 | 2 | 83 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.70E-38 | 2 | 71 | No hit | No description |
PRINTS | PR00404 | 3.1E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.0E-23 | 87 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.456 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 246 aa
Download sequence Send
to blast |
MGRGRVQLRR IENKIRRQVT FSKRRTGLVK KAQEISVLCD ADVALIVFSP KGKLFEYSAG 60 SSMERILDRY ERSLYAGQEI PTPNLDSQAE CSTECSKLLR MIDVMQRSIR HLKGEEVDAL 120 SIRELQGLEM QLDTALKKTR SRKNQLMVES ITQLQKKEKE LKELKKQLTK KPGQREDFEP 180 KNLRHDLATP PCAPPHALPR PISPPPPLFF GDTSQRSGVE EVAAGTLIRR TNTTLPHWMP 240 RLTGE*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY141238 | 0.0 | AY141238.1 Arabidopsis thaliana MADS-box protein AGL79 mRNA, complete cds. |