PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0556s0619.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 276aa    MW: 31363.6 Da    PI: 7.3917
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0556s0619.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.71.8e-202976148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT eEd+ll+++v+ +G g+W+t+a++ g++R++k+c++rw +yl
  Bostr.0556s0619.1.p 29 KGPWTLEEDKLLAEYVTSHGEGRWSTVAKCAGLNRSGKSCRLRWVNYL 76
                         79********************************************97 PP
2Myb_DNA-binding507.1e-1682126147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg  T++E+ ++++++ ++G++ W+tIar+++ gRt++++k++w+++
  Bostr.0556s0619.1.p  82 RGQITPQEEGIILELHSLWGNK-WSTIARYLP-GRTDNEIKNYWRTH 126
                          7888******************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.9922476IPR017930Myb domain
SuperFamilySSF466897.86E-3226123IPR009057Homeodomain-like
SMARTSM007174.0E-162878IPR001005SANT/Myb domain
PfamPF002493.3E-182976IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-233083IPR009057Homeodomain-like
CDDcd001671.36E-123176No hitNo description
PROSITE profilePS5129424.15977131IPR017930Myb domain
SMARTSM007171.8E-1381129IPR001005SANT/Myb domain
PfamPF002491.0E-1382126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2384130IPR009057Homeodomain-like
CDDcd001673.28E-1086126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MLDWGFQGHH QKHDHDPYQQ QQQQQGCRKG PWTLEEDKLL AEYVTSHGEG RWSTVAKCAG  60
LNRSGKSCRL RWVNYLRPGL KRGQITPQEE GIILELHSLW GNKWSTIARY LPGRTDNEIK  120
NYWRTHYKKK EKSSSKQDKV KRSQSRKQEV DLKSQPQAQP QNHPSQLVSR DHINLDNEQN  180
IASSLYYPTS VFNDQFSMPQ SVAATSSDHS MIDESHLWGN LWNLDDDDPH GFGGGSGQRI  240
AADLSEKFLD GGIEAPSCGS GDYSYTGFYM GGYIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25291307107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0556s0619.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3719800.0AF371980.2 Arabidopsis thaliana putative transcription factor MYB121 (MYB121) mRNA, complete cds.
GenBankAY5195930.0AY519593.1 Arabidopsis thaliana MYB transcription factor (At3g30210) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010514673.10.0PREDICTED: transcription factor MYB24-like
TrEMBLA0A178VB631e-175A0A178VB63_ARATH; MYB121
STRINGBostr.0556s0619.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.11e-166myb domain protein 121