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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Bostr.0556s0589.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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| Family |
C2H2 |
| Protein Properties |
Length: 285aa MW: 32018.4 Da PI: 9.9751 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bostr.0556s0589.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 11.5 | 0.00096 | 5 | 23 | 1 | 19 |
EEETTTTEEESSHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrH 19
+kC++CgksF L H
Bostr.0556s0589.1.p 5 HKCNICGKSFGYYQALGGH 23
79********877666655 PP
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| 2 | zf-C2H2 | 14.3 | 0.00012 | 216 | 238 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y C++CgksF + L +H+r+H
Bostr.0556s0589.1.p 216 YDCKICGKSFVCSQALGNHQRVH 238
88*******************99 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF57667 | 9.22E-5 | 3 | 26 | No hit | No description |
| Pfam | PF13912 | 6.7E-10 | 5 | 25 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 9.702 | 5 | 32 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 34 | 5 | 25 | IPR015880 | Zinc finger, C2H2-like |
| SuperFamily | SSF57667 | 5.99E-11 | 99 | 122 | No hit | No description |
| Pfam | PF13912 | 2.5E-8 | 100 | 124 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.68 | 100 | 122 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 10.097 | 100 | 127 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 102 | 122 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 5.99E-11 | 211 | 238 | No hit | No description |
| Pfam | PF13912 | 3.5E-4 | 216 | 240 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 4.3E-7 | 216 | 238 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 0.027 | 216 | 238 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 12.715 | 216 | 243 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 218 | 238 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 285 aa
Download sequence Send
to blast |
SNSSHKCNIC GKSFGYYQAL GGHKRLQKSI KGKLARKREY TKDDNSLFDS SEAKKIVSQQ 60
SKFEVSQEEI LDCVDSKQDF SELLPLNFKL QKRPESSSSY KCKICGKSFG CIQGLGGHKI 120
LHRPIRGQSA SKKEYTEDDN SLSHSSEAKK IVSKPSSFEV SQEKVLHYVE LKQDFSELLS 180
YPGFDKSSSC SKTSFSALPS TLRSKLQKKT QSKSSYDCKI CGKSFVCSQA LGNHQRVHRP 240
IREQLARKRK YTKDYNSLSG SLEAKKIVSQ PLSFEVTQEK ILHC*
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