PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0556s0535.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 94aa    MW: 10823.2 Da    PI: 9.3345
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0556s0535.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.12.4e-0622601854
                         HHHHHHHCTSCC.C....TTS-STCHHHHHHHHHHHHHH CS
                  HLH 18 safeeLrellPk.as.kapskKlsKaeiLekAveYIksL 54
                         +  ++Lr+ lP+ +  + ++ K+s + +L+++++YI++L
  Bostr.0556s0535.1.p 22 DLVSKLRQFLPEiRErRRSHDKVSASKVLQETCNYIRKL 60
                         56689*******766899999****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.998460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-61974IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-72278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MSNRRSRQSS SASRISDDQM IDLVSKLRQF LPEIRERRRS HDKVSASKVL QETCNYIRKL  60
HREVDNLSDR LSHLLDSVDE DSPEAAVIRS LLM*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0556s0535.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0246401e-129BT024640.1 Arabidopsis thaliana unknown protein (At3g28857) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_974372.12e-53basic helix-loop-helix (bHLH) DNA-binding family protein
SwissprotQ9LJX11e-54PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A178V8X24e-52A0A178V8X2_ARATH; PRE5
STRINGBostr.0556s0535.1.p2e-58(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.11e-46bHLH family protein