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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Bostr.0556s0467.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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| Family |
MYB |
| Protein Properties |
Length: 229aa MW: 26455.7 Da PI: 6.8818 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bostr.0556s0467.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 50.7 | 4.1e-16 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WT eEd l d+v +G+g+W++I r+ g++R++k+c++rw +yl
Bostr.0556s0467.1.p 16 KGLWTVEEDNVLMDYVLTHGTGQWNRIVRKTGLKRCGKSCRLRWMNYL 63
678*******************************************97 PP
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| 2 | Myb_DNA-binding | 59.8 | 6e-19 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g +T++E++l+++++k+lG++ W++Ia++++ gRt++q+k++w+++l
Bostr.0556s0467.1.p 69 KGTFTEQEEDLIIRLHKLLGNR-WSLIAKRVP-GRTDNQVKNYWNTHL 114
799*******************.*********.************996 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 229 aa
Download sequence Send
to blast |
MRIRRREERE NQEYKKGLWT VEEDNVLMDY VLTHGTGQWN RIVRKTGLKR CGKSCRLRWM 60
NYLSPNVKKG TFTEQEEDLI IRLHKLLGNR WSLIAKRVPG RTDNQVKNYW NTHLSKKLVG 120
DYSSAVKTTG DDEDSPPSLF ITATTTSSLH HQQDNIYENI AKSFDGVVSV SYEDKPKPER 180
DQTDVVVATT NDPSHYYGYN VLWDHGDEFE LSLLAMMNFA AADIEYCL*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in leaves. Together with TTG1 and GL3, promotes trichome formation and endoreplication. Regulates the production of a signal that induces hair (trichome) precursor cells on leaf primordia to differentiate. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes (By similarity). {ECO:0000250, ECO:0000269|PubMed:11063707, ECO:0000269|PubMed:12356720, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15728674, ECO:0000269|PubMed:9625690}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by gibberellins (PubMed:9625690). May be regulated by GEBP and GEBP-like proteins (PubMed:12535344). {ECO:0000269|PubMed:12535344, ECO:0000269|PubMed:9625690}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY519590 | 0.0 | AY519590.1 Arabidopsis thaliana MYB transcription factor (At3g27920) mRNA, complete cds. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Nayidu NK, et al.
Comparison of five major trichome regulatory genes in Brassica villosa with orthologues within the Brassicaceae.
PLoS ONE, 2014. 9(4): p. e95877
[PMID:24755905] - Sun L, et al.
GLABROUS INFLORESCENCE STEMS3 (GIS3) regulates trichome initiation and development in Arabidopsis.
New Phytol., 2015. 206(1): p. 220-30
[PMID:25640859] - Yu D, et al.
RPN1a, a subunit of the 26S proteasome, controls trichome development in Arabidopsis.
Plant Physiol. Biochem., 2015. 88: p. 82-8
[PMID:25676129] - Huang M,Hu Y,Liu X,Li Y,Hou X
Arabidopsis LEAFY COTYLEDON1 controls cell fate determination during post-embryonic development.
Front Plant Sci, 2015. 6: p. 955
[PMID:26579186] - Dai X, et al.
A single amino acid substitution in the R3 domain of GLABRA1 leads to inhibition of trichome formation in Arabidopsis without affecting its interaction with GLABRA3.
Plant Cell Environ., 2016. 39(4): p. 897-907
[PMID:26667588] - Zheng K, et al.
Ectopic expression of R3 MYB transcription factor gene OsTCL1 in Arabidopsis, but not rice, affects trichome and root hair formation.
Sci Rep, 2016. 6: p. 19254
[PMID:26758286] - Li Y, et al.
Two IIIf Clade-bHLHs from Freesia hybrida Play Divergent Roles in Flavonoid Biosynthesis and Trichome Formation when Ectopically Expressed in Arabidopsis.
Sci Rep, 2016. 6: p. 30514
[PMID:27465838] - Hegebarth D,Buschhaus C,Wu M,Bird D,Jetter R
The composition of surface wax on trichomes of Arabidopsis thaliana differs from wax on other epidermal cells.
Plant J., 2016. 88(5): p. 762-774
[PMID:27496682] - Busta L,Hegebarth D,Kroc E,Jetter R
Changes in cuticular wax coverage and composition on developing Arabidopsis leaves are influenced by wax biosynthesis gene expression levels and trichome density.
Planta, 2017. 245(2): p. 297-311
[PMID:27730411] - Maxwell DJ,Partridge JC,Roberts NW,Boonham N,Foster GD
The effects of surface structure mutations in Arabidopsis thaliana on the polarization of reflections from virus-infected leaves.
PLoS ONE, 2017. 12(3): p. e0174014
[PMID:28346494] - García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V
The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes.
Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586
[PMID:29264953] - Kim SY,Hyoung S,So WM,Shin JS
The novel transcription factor TRP interacts with ZFP5, a trichome initiation-related transcription factor, and negatively regulates trichome initiation through gibberellic acid signaling.
Plant Mol. Biol., 2018. 96(3): p. 315-326
[PMID:29335898]
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