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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Bostr.0556s0243.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family |
RAV |
Protein Properties |
Length: 337aa MW: 38047.6 Da PI: 8.2165 |
Description |
RAV family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Bostr.0556s0243.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 40.2 | 8.8e-13 | 55 | 103 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s++kGV + +grW A+I++ ++r++lg+f ++eAa+a++ a+ +++g
Bostr.0556s0243.1.p 55 SRHKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDVAAHRFRG 103
6899998778.8*********3.....5**********99************998 PP
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2 | B3 | 98.4 | 4.6e-31 | 183 | 285 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82
f+k+ tpsdv+k++rlv+pk+ ae+h ++++ +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD + F
Bostr.0556s0243.1.p 183 FEKTATPSDVGKLNRLVIPKHQAEKHfplplgdnNNVSVKGMLLNFEDINGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKRLCAGDLISF 272
89*****************************998777889************************************************** PP
EE-SSSEE..EEE CS
B3 83 kldgrsefelvvk 95
++++ ++++l+++
Bostr.0556s0243.1.p 273 RRSNGHDQKLYIG 285
*887788877776 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 337 aa
Download sequence Send
to blast |
MEALSSVDES STTTESIHTP VKIPASLLYR MGSGTSVVLD SENGVEAESR KLPSSRHKGV 60 VPQPNGRWGA QIYEKHQRVW LGTFNEEDEA ARAYDVAAHR FRGRDAVTNF KETTLVNGDY 120 DEEEVDFLNA HSKSEIVDML RKHTYNEELE QRKRNRNGYG KKTTEFDSVT VVITGFKTAE 180 LLFEKTATPS DVGKLNRLVI PKHQAEKHFP LPLGDNNNVS VKGMLLNFED INGKVWRFRY 240 SYWNSSQSYV LTKGWSRFVK EKRLCAGDLI SFRRSNGHDQ KLYIGSKSKS GSGSDQDTGR 300 VVRLFGVDIC FSDAVEVKEE TEMFMSLSSN KNQRVL*
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB028607 | 1e-175 | AB028607.1 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K13N2. |
GenBank | AJ441073 | 1e-175 | AJ441073.1 Arabidopsis thaliana mRNA for putative auxin response factor 14 (arf14 gene). |
GenBank | AK229415 | 1e-175 | AK229415.1 Arabidopsis thaliana mRNA for AP2 domain transcription factor, complete cds, clone: RAFL16-68-B16. |
GenBank | AY087951 | 1e-175 | AY087951.1 Arabidopsis thaliana clone 39877 mRNA, complete sequence. |
GenBank | CP002686 | 1e-175 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |