PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0556s0160.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family WRKY
Protein Properties Length: 511aa    MW: 55655.7 Da    PI: 8.7904
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0556s0160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.53.2e-34247303259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          dDgynWrKYGqK+vkgs+fprsYY+Ct++ Cpvkkkvers  d++v+ei+Y+g+Hnhe
  Bostr.0556s0160.1.p 247 DDGYNWRKYGQKQVKGSDFPRSYYKCTHPACPVKKKVERSL-DGQVTEIIYKGQHNHE 303
                          8****************************************.***************7 PP
2WRKY105.23.4e-33411469159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDg++WrKYGqK+vkg+++prsYY+Ct++ C v+k+ver+a+dpk+v++tYeg+Hnh+
  Bostr.0556s0160.1.p 411 LDDGFRWRKYGQKVVKGNPYPRSYYKCTTPACGVRKHVERAANDPKAVVTTYEGKHNHD 469
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.1E-30238305IPR003657WRKY domain
PROSITE profilePS5081124.202241305IPR003657WRKY domain
SuperFamilySSF1182904.18E-26244305IPR003657WRKY domain
SMARTSM007742.3E-37246304IPR003657WRKY domain
PfamPF031065.7E-26247303IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.4E-36396471IPR003657WRKY domain
SuperFamilySSF1182904.97E-29403471IPR003657WRKY domain
PROSITE profilePS5081136.77406471IPR003657WRKY domain
SMARTSM007743.3E-38411470IPR003657WRKY domain
PfamPF031061.5E-25412469IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MAEKKEEKEQ PSKLKSSTGV SRPTISLPPR PFGEMFFSGG VGFSPGPMTL VANMFSDPDE  60
FKSFSQLLAG AMASPAAAAV AAAAAVVATA HHQTPVSSVG DGGGSGGDVD PRFKQNRPTG  120
LMITQPPGMF TVPPGLSPAT LLDSPGFFGL FSPLQGAFGM THQQALAQVT AQAVQGNNVH  180
LQQSQSEYPS STQQQEASLT EIPSFSSGPR SQIRASVQET SQGQRETSEI SVFVHRSQPQ  240
NADKPADDGY NWRKYGQKQV KGSDFPRSYY KCTHPACPVK KKVERSLDGQ VTEIIYKGQH  300
NHELPQKRGN NNGSSKNSDS ATQFQTSNSS LNKTKRDQET SQITTTEQMS EVSDSEEVGN  360
AETSVGEKHE DEPDPKRRST EVRVSEPVAS SHRTVTEPRI IVQTTSEVDL LDDGFRWRKY  420
GQKVVKGNPY PRSYYKCTTP ACGVRKHVER AANDPKAVVT TYEGKHNHDI PAARTSSHQL  480
KPNNLQNTST VNFNQQQPIA RLRLKEEQII *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-44221472578Probable WRKY transcription factor 4
2lex_A4e-44221472578Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0556s0160.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2247010.0AF224701.1 Arabidopsis thaliana WRKY DNA-binding protein 3 (WRKY3) mRNA, complete cds.
GenBankAK2290360.0AK229036.1 Arabidopsis thaliana mRNA for putative WRKY DNA-binding protein, complete cds, clone: RAFL16-33-J05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_178433.10.0WRKY DNA-binding protein 3
SwissprotQ9ZQ700.0WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLQ0WPM80.0Q0WPM8_ARATH; Putative WRKY DNA-binding protein
STRINGBostr.0556s0160.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.10.0WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]