PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

ZF-HD

Protein Properties

Length: 299aa MW: 33536.8 Da PI: 8.9892

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.0556s0077.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	103.7	1.1e-32	90	145	4	60
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++YkeClkNhAas+Gg+a+DGCgEfmps ge+g+++al+C+AC+CHRnFHRreve e Bostr.0556s0077.1.p 90 IKYKECLKNHAASMGGNAIDGCGEFMPS-GEDGSIEALTCSACNCHRNFHRREVEGE 145 79***********************9.999*******************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	1.0E-26	90	152	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.4E-29	90	142	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	7.0E-32	91	142	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.822	92	141	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	3.76E-20	216	289	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-31	222	290	IPR009057	Homeodomain-like
PROSITE profile	PS50071	8.503	226	290	IPR001356	Homeobox domain
TIGRFAMs	TIGR01565	2.3E-27	228	284	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MEIAGQEDLI PINTSYGNSV GGHGNMIHHL HHHHANSAPL SLNITTPNPP LVSSNGNGLG 60 KNHDYSHHHH VGYNIMVSNN NIKKEKPVVI KYKECLKNHA ASMGGNAIDG CGEFMPSGED 120 GSIEALTCSA CNCHRNFHRR EVEGEEKTFF SPYLNNHQPP PPQRKLMFHH KMIKSPSPQQ 180 MIMPIGVATA GSNSESEDLM EEDGGGSLTF RQPPPPPPPP YSYGHNQKKR FRTKFTQEQK 240 EKMMSFAERV GWKMQRQEES VVQQFCQEIG IRRRVLKVWM HNNKHSLSKK SNNVNNNV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-24	229	286	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00258	DAP	Transfer from AT2G02540	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.0556s0077.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC004136	0.0	AC004136.3 Arabidopsis thaliana chromosome 2 BAC T8K22 genomic sequence, complete sequence.
GenBank	AY091515	0.0	AY091515.1 Arabidopsis thaliana hypothetical protein At2g02540/T822.16 mRNA, complete cds.
GenBank	AY773834	0.0	AY773834.1 Arabidopsis thaliana clone pENTR221-At2g02540 hypothetical protein (At2g02540) mRNA, complete cds.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010502266.1	0.0	PREDICTED: zinc-finger homeodomain protein 3-like
Swissprot	O64722	1e-169	ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBL	D7LQ45	1e-175	D7LQ45_ARALL; Uncharacterized protein
STRING	Bostr.0556s0077.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3339	26	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	1e-161	homeobox protein 21

Link Out ? help Back to Top
Phytozome	Bostr.0556s0077.1.p

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]