PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0556s0034.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 566aa    MW: 62060.3 Da    PI: 9.4859
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0556s0034.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.6e-05138160123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C  C+k F r  nL+ H r H
  Bostr.0556s0034.1.p 138 FICDVCNKGFQREQNLQLHRRGH 160
                          89*******************88 PP
2zf-C2H213.20.00027214236123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k++  +s+ k H +t+
  Bostr.0556s0034.1.p 214 WKCEKCSKRYAVQSDWKAHSKTC 236
                          58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.14E-7137160No hitNo description
Gene3DG3DSA:3.30.160.601.2E-5137160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121718.1E-5138160IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0061138160IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.928138160IPR007087Zinc finger, C2H2
PROSITE patternPS000280140160IPR007087Zinc finger, C2H2
SMARTSM00355110179209IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-5202235IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.14E-7209234No hitNo description
SMARTSM00355130214234IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MSSISMDSSC SYNSSLRFLL KRLFDFFHYI YIFKLFFVWI ICRLYSLPRK EEDLKMSSSS  60
YNTSGIPSSS SAQPFFITSS GAGDNDFNRK DTFMSMIQQP NSSAPPPPKK RRNQPGNPNP  120
DAEVVALSPK TLMATNRFIC DVCNKGFQRE QNLQLHRRGH NLPWKLKQKS TKEVRRKVYL  180
CPEPTCVHHD PSRALGDLTG IKKHYYRKHG EKKWKCEKCS KRYAVQSDWK AHSKTCGTKE  240
YRCDCGTIFS RRDSYITHRA FCDALIQETA RNPTVSFTSM ATATSSAGSG GIYGRLGGGS  300
ALSHHHMSGH PTYGFTPLAG YNLNMASSEN RRDFVPQSSN PNFLIQCSSS QGMLTTTPNN  360
NDQSFMNQHG LLQFDPVDNI NLKSSSTNNS FFNLGFFQEN TKNSETSLPS LYNTDVLVHH  420
PEENLNAGSN VSATALLQKA TQMGSLTSND SALFRGLASS SNSSSVTANH FGGRIMENDN  480
NGNLQGLMNS LAAVNGGSGG SGGNIFDVHF GNNGNMSGSD KLTLDFLGVG GMVRNVNRGG  540
GNGRGGVSLD GEAKFPEQSH PFGRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-34210276369Zinc finger protein JACKDAW
5b3h_F9e-34210276369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0556s0034.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1177330.0AK117733.1 Arabidopsis thaliana At2g02080 mRNA for putative C2H2-type zinc finger protein, complete cds, clone: RAFL17-41-L01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020881175.10.0protein indeterminate-domain 4, chloroplastic isoform X1
SwissprotQ8GYC10.0IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLR0FMS20.0R0FMS2_9BRAS; Uncharacterized protein
STRINGBostr.0556s0034.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36781759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.10.0indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]