PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0556s0002.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family G2-like
Protein Properties Length: 72aa    MW: 8240.6 Da    PI: 11.3437
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0556s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.82.1e-27254255
              G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         +r++W++ LH++Fv+av+qL G++kA Pk+ilelm+v+gL++++v+SHLQk+R+
  Bostr.0556s0002.1.p  2 KRVVWSNALHQQFVNAVNQL-GIDKAKPKRILELMNVPGLSRDNVASHLQKFRM 54
                         79******************.********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-27155IPR009057Homeodomain-like
PROSITE profilePS5129412.3157IPR017930Myb domain
SuperFamilySSF466898.69E-19257IPR009057Homeodomain-like
TIGRFAMsTIGR015579.6E-25254IPR006447Myb domain, plants
PfamPF002492.2E-7352IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 72 aa     Download sequence    Send to blast
MKRVVWSNAL HQQFVNAVNQ LGIDKAKPKR ILELMNVPGL SRDNVASHLQ KFRMCQKGQT  60
QMLERSSSQR Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-19357761ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0556s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0881497e-56AY088149.1 Arabidopsis thaliana clone 41875 mRNA, complete sequence.
GenBankAY0997267e-56AY099726.1 Arabidopsis thaliana putative two-component response regulator protein (At2g01760) mRNA, complete cds.
GenBankAY1288877e-56AY128887.1 Arabidopsis thaliana putative two-component response regulator protein (At2g01760) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001324401.18e-25response regulator 14
RefseqXP_023638473.19e-25two-component response regulator ARR14 isoform X1
SwissprotQ8L9Y31e-25ARR14_ARATH; Two-component response regulator ARR14
TrEMBLA0A1P8B0232e-23A0A1P8B023_ARATH; Response regulator 14
TrEMBLR0H7863e-23R0H786_9BRAS; Two-component response regulator
STRINGBostr.0556s0002.1.p2e-46(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15903712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.16e-28response regulator 14