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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Bostr.0124s0106.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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| Family |
SBP |
| Protein Properties |
Length: 182aa MW: 20752.2 Da PI: 9.6334 |
| Description |
SBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bostr.0124s0106.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SBP | 135 | 2.4e-42 | 63 | 138 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77
Cqv++C+adl+eak yhrrhkvCevh+ka++v++sg++qrfCqqCsrfhel+efDe+krsCrrrLa+hnerrrk++
Bostr.0124s0106.1.p 63 CQVDRCTADLKEAKLYHRRHKVCEVHAKASSVFLSGVSQRFCQQCSRFHELQEFDEAKRSCRRRLAGHNERRRKSS 138
**************************************************************************86 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009908 | Biological Process | flower development |
| GO:0010321 | Biological Process | regulation of vegetative phase change |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 182 aa
Download sequence Send
to blast |
MEGQRTQGQG YLKSKSYLVE EEIENDIDGE EEIGRDEEKR KGVMDRVRGS SGSIDRVGSS 60
RLCQVDRCTA DLKEAKLYHR RHKVCEVHAK ASSVFLSGVS QRFCQQCSRF HELQEFDEAK 120
RSCRRRLAGH NERRRKSSGD SFGEGSGRRG ITGQVIQNQE RSRVEMTLPM PNSSFKRPQI 180
R*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16914499}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040, ECO:0000305|PubMed:16914499}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AJ011632 | 1e-160 | AJ011632.1 Arabidopsis thaliana (ecotype Landsberg erecta) mRNA for squamosa promoter binding protein-like 4, partial. |
| GenBank | AY084902 | 1e-160 | AY084902.1 Arabidopsis thaliana clone 12071 mRNA, complete sequence. |
| Publications
? help Back to Top |
- Jorgensen SA,Preston JC
Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
Mol. Phylogenet. Evol., 2014. 73: p. 129-39
[PMID:24508602] - Hyun Y, et al.
Site-directed mutagenesis in Arabidopsis thaliana using dividing tissue-targeted RGEN of the CRISPR/Cas system to generate heritable null alleles.
Planta, 2015. 241(1): p. 271-84
[PMID:25269397] - Xu M, et al.
Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
PLoS Genet., 2016. 12(8): p. e1006263
[PMID:27541584] - Ioannidi E, et al.
Trichome patterning control involves TTG1 interaction with SPL transcription factors.
Plant Mol. Biol., 2016. 92(6): p. 675-687
[PMID:27631431] - Jung JH,Lee HJ,Ryu JY,Park CM
SPL3/4/5 Integrate Developmental Aging and Photoperiodic Signals into the FT-FD Module in Arabidopsis Flowering.
Mol Plant, 2016. 9(12): p. 1647-1659
[PMID:27815142]
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