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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.0124s0040.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | FAR1 | ||||||||
Protein Properties | Length: 710aa MW: 82112.2 Da PI: 7.1282 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 68 | 2.3e-21 | 100 | 183 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YA+evGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w+v ++ l+HnH l Bostr.0124s0040.1.p 100 NYYNCYATEVGFRVRVKNSWFKRHSKEKYGAVLCCSSQGFKRINDVN-----RVRKETRTGCPAMIRMRQVDSKRWRVLEVTLDHNHLL 183 69*****************************************9988.....999********************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-18 | 100 | 183 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.8E-24 | 303 | 395 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.606 | 590 | 626 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 9.0E-5 | 598 | 622 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.1E-6 | 601 | 628 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 710 aa Download sequence Send to blast |
MERSESVDED VQASEYLQND EIRERDDPMS GGGSTLRIGE ALVCSSDHEI DVGFCQNEER 60 KSEEEATEEF DEQSGLLVER KEFDPPAVGI EFESYDDAYN YYNCYATEVG FRVRVKNSWF 120 KRHSKEKYGA VLCCSSQGFK RINDVNRVRK ETRTGCPAMI RMRQVDSKRW RVLEVTLDHN 180 HLLGSKLYKS VKRIGTGTKR KCVSSPVSDA KTIKLYRARV MDTGNNVNPN STLKKQFQNS 240 AGSPDSFNLK RGDSAAIYNY FCRMQLTNPN FFYLMDVNDE GQLRNVFWAD AFSKVSCSYF 300 GDIIFIDNSY ISGKFEIPLV TFTGVNHHGQ TTLLSCGLLA GETMESYHWL LKVWLSVMKC 360 SPQTIVTDRC KPLEAAISQV FPRSHHRFSL THIMRKIPEK LGGLHNYDGV RKAFTKAVYE 420 TLKVVEFEAA WGFMVHNFGV IDNEWLRCLY EERAKWAPVY LKDTFFAGIA AAHPGETLNP 480 FFERYVHKQT PLKEFLDKYE LALQKKHREE SLSDRESLTL NTAELKTKCS FETQLSRIYT 540 RDMFKKFQVE VEEMYSCFST TQLHVDGPFV IFLVKERVQG ESNRREIRDF EVLYNRSVGE 600 VRCICSCFNF YGYLCRHALC VLNFNGVEEI PLRYILPRWR KDYKRVHFTD NGLTGFVDGT 660 DRVQWFDQLY KKALQVVEEG AVSLDHYKVA MQVLQQSLDK VHGVEEKQE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.0124s0040.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY080775 | 0.0 | AY080775.1 Arabidopsis thaliana unknown protein (At1g52520) mRNA, complete cds. | |||
GenBank | AY133776 | 0.0 | AY133776.1 Arabidopsis thaliana clone U10495 unknown protein (At1g52520) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006306897.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 | ||||
Swissprot | Q9SSQ4 | 0.0 | FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6 | ||||
TrEMBL | R0IMD0 | 0.0 | R0IMD0_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.0124s0040.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10788 | 25 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 0.0 | FAR1-related sequence 6 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.0124s0040.1.p |
Publications ? help Back to Top | |||
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