PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	24.2	8.6e-08	76	98	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg++++++s+L +H+r H Bathy18g01330 76 HECGVCGRMCTTPSLLATHMRIH 98 78*******************99 PP
2	zf-C2H2	26.3	1.8e-08	104	126	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+Fsr ++L+ H+r H Bathy18g01330 104 YECDVCEKRFSRADSLRDHMRIH 126 99*******************99 PP
3	zf-C2H2	25.5	3.2e-08	132	154	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+k F++ +L++H+r H Bathy18g01330 132 YECDVCDKAFRQYGHLQTHMRIH 154 99*******************99 PP
4	zf-C2H2	24.4	7.4e-08	160	182	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+ + +L++H+r H Bathy18g01330 160 YECDVCEKRFRESGTLQSHMRIH 182 99*******************99 PP
5	zf-C2H2	27.4	8.1e-09	188	210	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+++s+L++H+r H Bathy18g01330 188 YECDVCEKRFRQSSDLRSHMRIH 210 99*******************99 PP
6	zf-C2H2	21.7	5.3e-07	216	238	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+k F+++ Lk H r H Bathy18g01330 216 YECDVCDKAFRHSNALKIHKRIH 238 99*******************99 PP
7	zf-C2H2	24.5	6.9e-08	244	267	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C C k+Fsr+++Lk+H r+ H Bathy18g01330 244 YACAVCEKRFSRSESLKKHTRRwH 267 89*******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.0043	76	98	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.6E-13	76	105	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	13.464	76	103	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.36E-17	76	126	No hit	No description
Pfam	PF00096	1.7E-5	76	98	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	78	98	IPR007087	Zinc finger, C2H2
SMART	SM00355	2.7E-5	104	126	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	16.436	104	131	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	106	126	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.1E-18	106	133	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.54E-24	113	169	No hit	No description
Pfam	PF13465	2.2E-10	118	142	IPR007087	Zinc finger, C2H2
SMART	SM00355	2.7E-5	132	154	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	16.456	132	159	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.8E-17	134	153	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	134	154	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.1E-17	154	179	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	1.5E-4	160	182	IPR015880	Zinc finger, C2H2-like
Pfam	PF13894	3.8E-4	160	182	No hit	No description
PROSITE profile	PS50157	16.061	160	187	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	162	182	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.05E-24	169	225	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.7E-20	180	207	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	5.6E-5	188	210	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	16.747	188	215	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	190	210	IPR007087	Zinc finger, C2H2
Pfam	PF13465	8.9E-11	202	227	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.5E-18	208	236	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.19E-19	210	262	No hit	No description
PROSITE profile	PS50157	16.29	216	243	IPR007087	Zinc finger, C2H2
SMART	SM00355	4.3E-4	216	238	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	218	238	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	5.6E-14	237	264	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12874	0.033	244	264	No hit	No description
SMART	SM00355	1.1	244	267	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	12.196	244	267	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	246	267	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MGGRRKNPHP KRAENARTVL KEEKEEPKVL CLKIPPPVVD DDDDEVVGEV EIQDEIIRKE 60 MTTATKKAAK RKRGQHECGV CGRMCTTPSL LATHMRIHTN EKPYECDVCE KRFSRADSLR 120 DHMRIHTNEK PYECDVCDKA FRQYGHLQTH MRIHTNERPY ECDVCEKRFR ESGTLQSHMR 180 IHTNEKPYEC DVCEKRFRQS SDLRSHMRIH TNEKPYECDV CDKAFRHSNA LKIHKRIHTN 240 EKPYACAVCE KRFSRSESLK KHTRRWH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2i13_A	2e-52	76	264	15	188	Aart
2i13_B	2e-52	76	264	15	188	Aart
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FO082261	0.0	FO082261.1 Bathycoccus prasinos genomic : Chromosome_18.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007508216.1	0.0	PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
Swissprot	A6NK53	8e-66	ZN233_HUMAN; Zinc finger protein 233
TrEMBL	K8ER24	0.0	K8ER24_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRING	XP_007508216.1	0.0	(Bathycoccus prasinos)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP70	6	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.2	1e-13	C2H2 family protein

Link Out ? help Back to Top
Entrez Gene	19010865