PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy17g01100
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 263aa    MW: 31236.3 Da    PI: 7.9304
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy17g01100genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H224.28.2e-0897119123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C  C k+F ++ +L rH+rtH
  Bathy17g01100  97 HECDVCEKVFGSQADLARHMRTH 119
                    78********************9 PP
2zf-C2H227.66.9e-09125147123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C ksF++ snLkrH r H
  Bathy17g01100 125 YECDVCEKSFTQASNLKRHKRIH 147
                    99*******************99 PP
3zf-C2H226.12.1e-08153175123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+++ +Lk+H+r H
  Bathy17g01100 153 YECDVCEKRFRDSGDLKVHMRIH 175
                    99*******************99 PP
4zf-C2H228.14.7e-09181203123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C+k F+++ +L++H+r H
  Bathy17g01100 181 YECDVCDKAFRQSGHLQSHMRIH 203
                    99*******************99 PP
5zf-C2H228.44e-09209231123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+++snLk+H+r H
  Bathy17g01100 209 YECDVCEKCFRDSSNLKKHMRIH 231
                    99*******************99 PP
6zf-C2H221.27.6e-07237259123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C+k F+ + +LkrH rtH
  Bathy17g01100 237 YECDVCDKAFRYSQHLKRHKRTH 259
                    99********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.42E-1996147No hitNo description
Gene3DG3DSA:3.30.160.604.7E-1597126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015715.29397124IPR007087Zinc finger, C2H2
SMARTSM003555.9E-597119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
PfamPF134651.6E-10111135IPR007087Zinc finger, C2H2
PROSITE profilePS5015716.685125152IPR007087Zinc finger, C2H2
SMARTSM003559.1E-5125147IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.2E-18127154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280127147IPR007087Zinc finger, C2H2
SuperFamilySSF576671.48E-24133190No hitNo description
PfamPF000962.6E-6153175IPR007087Zinc finger, C2H2
PROSITE profilePS5015715.687153180IPR007087Zinc finger, C2H2
SMARTSM003553.9E-5153175IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-18155181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
PROSITE profilePS5015716.727181208IPR007087Zinc finger, C2H2
PfamPF000964.8E-7181203IPR007087Zinc finger, C2H2
SMARTSM003553.0E-5181203IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-16182200IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280183203IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-18201228IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.96E-21203255No hitNo description
PROSITE profilePS5015716.768209236IPR007087Zinc finger, C2H2
SMARTSM003558.4E-5209231IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280211231IPR007087Zinc finger, C2H2
PfamPF134655.3E-11223247IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.7E-16229259IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.11237262IPR007087Zinc finger, C2H2
SMARTSM003550.0012237259IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280239259IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MSRRKNPHPK RAVNARTVLK GEKEEPLVLC SKIPDEDDDF EGNHHQIQKE EEEDDDVEQL  60
RRIMCVPRDD VVTEQNQMRK EEETTFIAKG VKRKRGHECD VCEKVFGSQA DLARHMRTHT  120
NEKPYECDVC EKSFTQASNL KRHKRIHMNE KPYECDVCEK RFRDSGDLKV HMRIHTKEKP  180
YECDVCDKAF RQSGHLQSHM RIHTNERPYE CDVCEKCFRD SSNLKKHMRI HTNEKPYECD  240
VCDKAFRYSQ HLKRHKRTHC AL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A6e-509725922188Aart
2i13_B6e-509725922188Aart
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822620.0FO082262.1 Bathycoccus prasinos genomic : Chromosome_17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007508340.10.0PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
SwissprotP170361e-57ZNF3_HUMAN; Zinc finger protein 3
TrEMBLK8ER900.0K8ER90_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRINGXP_007508340.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.24e-13C2H2 family protein