PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy17g00320
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family Nin-like
Protein Properties Length: 1232aa    MW: 134937 Da    PI: 6.8634
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy17g00320genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK71.79.8e-23575622451
         RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 
                     i+le l+ +Fs+++kdAA +Lgv+ T+LKriCRqyGI RWP+R +ks
  Bathy17g00320 575 GITLELLQTQFSKHLKDAATDLGVGSTTLKRICRQYGIGRWPRRSLKS 622
                    69********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151915.426558643IPR003035RWP-RK domain
PfamPF020421.3E-18576622IPR003035RWP-RK domain
SuperFamilySSF542778.83E-129741043No hitNo description
Gene3DG3DSA:3.10.20.2405.7E-149741047No hitNo description
SMARTSM006661.19751045IPR000270PB1 domain
PfamPF005641.3E-49771039IPR000270PB1 domain
SuperFamilySSF542776.21E-1111451220No hitNo description
PROSITE profilePS5174512.0411451231IPR000270PB1 domain
SMARTSM006660.001111451231IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2401.4E-1011451217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1232 aa     Download sequence    Send to blast
MRLKSGRSPR ESETNSDMNR DEDITNASRG KTSTTFTTHE KKEGTVEDGS EQHPQFAVTL  60
LEKHQEQQQQ QQQQQNDLTS PPPTKGQDEK PNEMSRARRK KNEAIAVVSE LYRLHEVGKK  120
TNFRVTQEGL YQTMVELVNN ISARVEKSNM VQMWVPRIAG KSVVMTTHGE LCKISAKKKT  180
HDSVLAKKFT ENTTAFFFNC EVTNGEGMLG LPGRCYVLSR PEFTPSVTSY RPMEYVRVAC  240
AYECRIHTTM CLPVFLSEEA MKSERPFTIL EVALCHMTES IGELYAATAH EFMKLGLFTT  300
GHDRVGPERY MRKFIESTVE TLAPGHANAL ELMCETLNVP FAQFWIESNG LIVTAGCPYF  360
VKEKECQSYR DMSSQISLMI GQGPVGQAHS KETLIWVDDV QKASQIEWPL HHTSILLGLR  420
GLCACKMRID CVLPDGTKKK TDAILEILLN PKLQTSAEQI QTVEEVWSYL QRGVRVDNTK  480
NAPDGASAPA VPDSPLAATA GVRGNDEQPA SMLMELPDLT GKNNNTDTTR EGKNNDDKTG  540
KGKGAAPMTT LQAVEHISMV NKGPDEKNKT SAPWGITLEL LQTQFSKHLK DAATDLGVGS  600
TTLKRICRQY GIGRWPRRSL KSKQYKAMKE AAKQQSSQNK LRKARSSGGH SSGGSPRDGG  660
SSFKSSGGDS DAVAGESVHG PGGRMSGGGS LSNLAKTGDG SPLGDGLFTM GSTGGAPIRG  720
KEGSGGVGAL LGSGEEGRSH GGFQAFRGIA TQGQFDWGDE EERERGASWH AGSGFVSHGR  780
LKNAKGQIVA SGSQHGGHTA SQFFGAQQHQ QPHQSMPIAP AMQQGDFGLA AEKAETKTPN  840
KKYKKDVAVG TKAGAGKAAV PFSFDDHFYE TVHGAHNFSQ QLYPHQYNNN DDSVHGSTYS  900
ESAHGGSHYN GGSMHGNPGG DHSVHGTTAL AGILNNTLGG FDDDLFIAND TMEEADADMM  960
AILLNEGEKV EEVPQLVVKF RVGADTIRFR LLHKWSVQML LDRIRKLIVF PDSAKLKYMD  1020
DEDDMCILQS EHDLDECIKF TEHRKKESGN SGNNKSATND PVVIGESNAQ NNARQQQQQQ  1080
QQQKQELLAT GFAPNKPNGG EITIFICLAD GSMPSLNAYE LIKQDIHSIP PSLSASVNAR  1140
RDQLTINVKV THDNDTCRFL LEPKMNHVTL MEHVLKLFGI QKETSSSSHY HRLTYLDDSE  1200
EWITLAGDLD LDECRALCGC SPSLRMKLLD R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176180KKKTH
2681688GGRMSGGG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822620.0FO082262.1 Bathycoccus prasinos genomic : Chromosome_17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007508332.10.0nodule inception protein
TrEMBLK8EQY90.0K8EQY9_9CHLO; Nodule inception protein
STRINGXP_007508332.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP547469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.22e-32Nin-like family protein