PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy15g00730
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 69aa    MW: 8433.67 Da    PI: 7.6681
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy15g00730genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.72.5e-071033123
                   EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                   y+C  C k+F+++ +Lk+H    H
  Bathy15g00730 10 YECDVCEKRFTQSGHLKTHTLYiH 33
                   99*****************87766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.78E-12138No hitNo description
Gene3DG3DSA:3.30.160.602.4E-6112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0081033IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.1521038IPR007087Zinc finger, C2H2
PROSITE patternPS0002801233IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-81349IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
MRIHTNEKPY ECDVCEKRFT QSGHLKTHTL YIHTYQYPEK VHQSLHLITE EEKIFLFFFF  60
SSFYIVRF*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822642e-59FO082264.1 Bathycoccus prasinos genomic : Chromosome_15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007508869.12e-43PREDICTED: zinc finger protein 347-like
TrEMBLK8F5854e-42K8F585_9CHLO; PREDICTED: zinc finger protein 347-like
STRINGXP_007508869.16e-43(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653