PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy11g02210
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family MYB
Protein Properties Length: 837aa    MW: 91410.3 Da    PI: 6.6142
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy11g02210genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.47e-18325371148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g W++eEde lv++v+q+G++ W++++r ++ gR +kqc++rw+++l
    Bathy11g02210 325 KGQWSKEEDEELVRLVTQFGTRKWSSVSRALN-GRVGKQCRERWNNHL 371
                      799*****************************.*************97 PP
2Myb_DNA-binding51.13.1e-16377419145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg+W+t E+ +l++++k lG++ W+ Ia+ ++ gRt++ +k++w+
    Bathy11g02210 377 RGSWSTKEESKLIELHKVLGNK-WADIAKGLP-GRTENAVKNHWN 419
                      89********************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.93320375IPR017930Myb domain
SuperFamilySSF466892.93E-28322418IPR009057Homeodomain-like
SMARTSM007179.2E-15324373IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-24326379IPR009057Homeodomain-like
PfamPF139212.2E-18328388No hitNo description
CDDcd001671.68E-13328371No hitNo description
PROSITE profilePS5129421.123376426IPR017930Myb domain
SMARTSM007174.9E-15376424IPR001005SANT/Myb domain
CDDcd001671.14E-10379422No hitNo description
Gene3DG3DSA:1.10.10.601.6E-20380425IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MEDDANDGVD FWRDNVFSIA DDHFRASLNA IVAPSEQTER RADRGSGMML GDEEAAGNGE  60
GRSELAKSLV QGQGDLSEHD FLDALDEALF GLGSEEIAVR VEEEAGKTRT KNTTKKTAKT  120
SKTTKHQPVY KKSSTEAGEL ALAATGGGDS NVLIKSTKAR LKTTNRSLES LSFILGSDGF  180
ARTTIEGVKT IPLREKGGLK EKGESSPSTK KPNGRGRKRK SEATRTVAPP PPTGDTTDED  240
STDSEIHYDL EENFLKSAAS LLEEYEETPT KKKRGRKPLD PEVKKARREQ RLRENKATNH  300
VTSISSKAAI TREKKPKPPP VEKIKGQWSK EEDEELVRLV TQFGTRKWSS VSRALNGRVG  360
KQCRERWNNH LRPDIRRGSW STKEESKLIE LHKVLGNKWA DIAKGLPGRT ENAVKNHWNA  420
TLRRKDGTPS ELRVYATTQT KGRGPIGRPR SRNKRPGDEE REALKEKILS ASVQEMDLAN  480
TNGDHESGAA ALGVSSPVAG DNEGSFVAFG NTTTNHSQSL LEQVLNNEDE LNNVCEDYND  540
DNDFIKSDDV DITAVNDEDD NATSLERSVS EQTREAETQT DPISDEQLVV LSEDDGTAEY  600
ASGYATTMTV FGGGCGAARS VQNAATEEYV EGDEDDVVDV EKPLKSSREA PPRTTKNPLR  660
RQAALNATLE KRERRTTRST VTSSNPTLLG FAIPEQNVVA TNTRSNKSCG KSKRPSSVIV  720
TLPNNKVDFA QIVGIHDPCN EFETRSSALE TASYASPTPL PREKSVNIQK TLKELVECVR  780
GTVQGISGVA LTTKSGTQAQ QKKVGGNCFV VSIAADQWAN AMKGVRCATA FLKTSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-403244256107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1449454RSRNKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822680.0FO082268.1 Bathycoccus prasinos genomic : Chromosome_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007510393.10.0predicted protein
TrEMBLK8FAT10.0K8FAT1_9CHLO; Uncharacterized protein
STRINGXP_007510393.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-43myb domain protein 98