PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy10g03950 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | MYB | ||||||||
Protein Properties | Length: 738aa MW: 81595.3 Da PI: 9.9235 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.4 | 4.5e-15 | 109 | 161 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48 +g WT+ Ed+ l +av+ + g++Wk+Ia+++ ++Rt+ qc +rwqk+l Bathy10g03950 109 KGGWTPAEDDVLRRAVAIYKGKNWKKIAEYFKtnegvEKRTDVQCLHRWQKVL 161 688**********************************99***********986 PP | |||||||
2 | Myb_DNA-binding | 57.8 | 2.5e-18 | 167 | 213 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEde+++ +v++lG ++W++Ia+ ++ gR +kqc++rw+++l Bathy10g03950 167 KGPWLKEEDEKIISLVAELGAKQWSKIAQQLP-GRIGKQCRERWYNHL 213 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 49.1 | 1.3e-15 | 219 | 263 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r W++eEd+ll++ +++ G++ W+ Ia+ + gRt++ +k++w++ Bathy10g03950 219 REDWSEEEDLLLIRKHQECGNK-WADIAKNFV-GRTDNAIKNHWNST 263 678*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.818 | 104 | 161 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-13 | 108 | 163 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-13 | 109 | 161 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.73E-13 | 110 | 171 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.1E-19 | 111 | 173 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.60E-11 | 112 | 161 | No hit | No description |
PROSITE profile | PS51294 | 31.178 | 162 | 217 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.73E-29 | 164 | 260 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-17 | 166 | 215 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-17 | 167 | 213 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.18E-15 | 169 | 213 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.6E-26 | 174 | 220 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.44 | 218 | 268 | IPR017930 | Myb domain |
SMART | SM00717 | 7.6E-16 | 218 | 266 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-14 | 219 | 263 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-21 | 221 | 268 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.60E-12 | 222 | 264 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032875 | Biological Process | regulation of DNA endoreduplication | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 738 aa Download sequence Send to blast |
MPPGRPPLTK IINALQKKKA TMISKKKTNV KTKTKKKPLK MKEEDFFFNS SGGMMMTEEE 60 EEEEENNRIL AHGNDEEEKN YETNGMNLKE ILTQRLEGRV GGPTRRSAKG GWTPAEDDVL 120 RRAVAIYKGK NWKKIAEYFK TNEGVEKRTD VQCLHRWQKV LNPELVKGPW LKEEDEKIIS 180 LVAELGAKQW SKIAQQLPGR IGKQCRERWY NHLNPEIKRE DWSEEEDLLL IRKHQECGNK 240 WADIAKNFVG RTDNAIKNHW NSTLKRRVEE AYAKGLPAEA AAFHNSSDEN GKKLSSGKGT 300 KSAKASAKNQ SQQASLIVAK TSTAEYRKYV VSNDDGEDIF DPLAGTVFAE TKTNRKTLGG 360 TVGATKRAAE MGGKKNNGEN AKKYRKKDSS NDAGLVSAAA GAPYEMNNHH RQHHHHNSPS 420 TRFHFQSPNT YAAAAARTPT DVRKYANEED AERGFEDVFD EHDNTMVHSP LASPSLLNWV 480 NGGGVTTRVT PGRLHAQTNA REGTMYDKYV ASPQQHDSPT NRLLSPEMKK KMATTTMMTT 540 TSAHHHSDPS NIPFHDMYQK MQQQLLQQKE AERINMTGGA SVDPPPAPTK APRGFADGSC 600 AFDNTAITFQ SPPARGGNDV STSAQMHADG DGDVTANGLV VAGLGKVSNY DGTGKKTKKN 660 NNRLSHLFRM GQDNSVGGAN NGGSGERMPS VLRGKQERET LEHHIAASPP RAMKLADAGM 720 PINFAGGFSP SNFLNRN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 4e-59 | 109 | 268 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-59 | 109 | 268 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00505 | DAP | Transfer from AT5G11510 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082269 | 0.0 | FO082269.1 Bathycoccus prasinos genomic : Chromosome_10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007510485.1 | 0.0 | unnamed protein product | ||||
TrEMBL | K8F8U2 | 0.0 | K8F8U2_9CHLO; Unnamed protein product | ||||
STRING | XP_007510485.1 | 0.0 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP15 | 16 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.2 | 6e-76 | myb domain protein 3r-4 |
Link Out ? help Back to Top | |
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Entrez Gene | 19013470 |