PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy09g00490
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 483aa    MW: 54652.5 Da    PI: 7.9906
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy09g00490genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26e-05266289123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    ++C +C ++F+  ++L+ H r+ H
  Bathy09g00490 266 FSCDICAETFKKEHLLTAHVRVeH 289
                    89*******************988 PP
2zf-C2H219.13.4e-06296319223
                    EET..TTTEEESSHHHHHHHHHHT CS
        zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
                     Cp  +Cgk Fsr+ +Lk+H  +H
  Bathy09g00490 296 LCPvpKCGKEFSRRTDLKKHGLVH 319
                    59999***************8776 PP
3zf-C2H2224.3e-07325347123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y C +C+++F ++snL++H r H
  Bathy09g00490 325 YACAYCDQRFISSSNLNKHERQH 347
                    89******************998 PP
4zf-C2H212.20.00057353376123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    y+C  C + Fsr+  L++H +  H
  Bathy09g00490 353 YSCRVCLRKFSRSLGLRNHVQQqH 376
                    99*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.082266289IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.51266294IPR007087Zinc finger, C2H2
PROSITE patternPS000280268289IPR007087Zinc finger, C2H2
SuperFamilySSF576678.6E-14274334No hitNo description
SMARTSM003550.74295319IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.103295324IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-11295318IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280297319IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-13319343IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.2E-16319371No hitNo description
PROSITE profilePS5015714.627325352IPR007087Zinc finger, C2H2
SMARTSM003550.0044325347IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280327347IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-10344373IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.868353381IPR007087Zinc finger, C2H2
SMARTSM003550.031353376IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280355376IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MRQKSKNPKR CFVAYDFQYP GKKRSRTPPL EEEDKEERAG KNEDGCDRDE NELERRRKLS  60
KMGAEMLLLS SSVLEEENLG AVPSSDGDVE DDANKLSREE EEPPPQLKPK VEGIRQNNND  120
ADNNDNNIDD TNNTEIKLMI ALQRSILLAC TELPDAQTAT AEARNAFLQM PLMNSLALAL  180
GSDAKSSFQG VSMDKITNHD VLQCVFVAAG ECKGDKKRAT KRNTKKDAPE LVNLPTRYVG  240
PHVGEKCCRS CWYRIYRMTN TLSLPFSCDI CAETFKKEHL LTAHVRVEHE GKQAYLCPVP  300
KCGKEFSRRT DLKKHGLVHT GERPYACAYC DQRFISSSNL NKHERQHTGF KPYSCRVCLR  360
KFSRSLGLRN HVQQQHLKDT SWSSSKVAVA EEKEKEEVET ASIKRKKGKK NWGDKTTAYT  420
APIYVLRPQG ETTNLNKNIN KKAPLSESEN SLELYLNTLA KEKETKKCEN HLNDDDDDES  480
SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A4e-2323838221190Aart
2i13_B4e-2323838221190Aart
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822700.0FO082270.1 Bathycoccus prasinos genomic : Chromosome_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007511068.10.0zinc finger protein Gfi-1
TrEMBLK8F2S10.0K8F2S1_9CHLO; Zinc finger protein Gfi-1
STRINGXP_007511068.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.28e-14C2H2 family protein